ET6463

CSHL Arabidopsis genetrap mutant lines

Original: ET6463

Phenotypes

Morphological phenotypes

Original description

  • reduced floral apex, curly leaves
Anatomical entity
/structure development stage
Phenotypes
(PO:)
  • present in fewer numbers in organism (PATO:0001997)
vascular leaf (PO:0009025)
  • curled (PATO:0000405)

Original: ET6463

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 21343075 [Map]; Strand: w
      • AT3G57630.1 - [+] show detail - exostosin family protein
        Distance: 0; Region: exon2 (CDS)
      • AT3G57630.2 - [+] show detail - exostosin family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET6463 - 3-prime edge
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTAAGATTAT 
    TAGTTATGTA TTCGTCCTGG ATCTGCAATT TTAGGTTTTT ACTTTCTGCA
    TGTTGAATTT TAAATTATTA GTTATGTATT CGTCCTAGAT TCATCTGTAG
    TGCCTTCTTT TGATTCTATT AGTGTAAGAC AAGCTCAGAA TTTTTGTGGT
    CCAAGTAATG AATCAATCTC ACAAGTGACT AAGGATTCAT CTCTCT
  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24615660 [Map]; Strand: c
      • AT5G61190.1 - [+] show detail - putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET6463 - 5-prime edge
    AAGTAAACCT GCTGGGATGT GATTAAGCGC GACACCAGTA GAAGAAAGTG 
    CTTGTTGATG ATGGAGAGGG ATGAAATTGG TATCGCCATA AGCCCAAATT
    GAGACAAGTC CACAATAATT CGTCTTCAAC AAAGCTGAAC TCACATTCAG
    GGCAATCACG TGCGCATCCC AACCTCTAGG TACCTCGCAA TTCTCTATAT
    CCCACCACAC CGATGTTTTA GCCTTCACGC AATTCTCTAG ATTTAGGGCT
    TCTGATACTA AATAAATATC ACCGGTAAAC ATGGTCTTAG GTTTTAATTT
    GGGAAAAAAT TTAGAGACTG ATCTTTTTTT T

AT3G57630.1

Model type
Protein coding
Short Description
exostosin family protein
Computational Description
exostosin family protein; FUNCTIONS IN: catalytic activity; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EGF, extracellular (InterPro:IPR013111), Exostosin-like (InterPro:IPR004263), EGF-like (InterPro:IPR006210), EGF-like, type 3 (InterPro:IPR000742), EGF-like region, conserved site (InterPro:IPR013032); BEST Arabidopsis thaliana protein match is: FRA8 homolog (TAIR:AT5G22940.1); Has 4457 Blast hits to 2809 proteins in 140 species: Archae - 0; Bacteria - 2; Metazoa - 2721; Fungi - 13; Plants - 998; Viruses - 0; Other Eukaryotes - 723 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G57630.2

Model type
Protein coding
Short Description
exostosin family protein
Computational Description
exostosin family protein; FUNCTIONS IN: catalytic activity; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263), EGF-like (InterPro:IPR006210); BEST Arabidopsis thaliana protein match is: FRA8 homolog (TAIR:AT5G22940.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G61190.1

Model type
Protein coding
Short Description
putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain
Computational Description
putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain; FUNCTIONS IN: zinc ion binding, nucleic acid binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, U1-type (InterPro:IPR003604), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: Putative endonuclease or glycosyl hydrolase (TAIR:AT3G62200.1); Has 3024 Blast hits to 2428 proteins in 238 species: Archae - 10; Bacteria - 118; Metazoa - 1187; Fungi - 140; Plants - 554; Viruses - 10; Other Eukaryotes - 1005 (source: NCBI BLink).
Link
InterPro Scan - TAIR