ET6513

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

semi-sterile

Anatomical entity /structure development stage	Phenotypes
seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997)

Original: ET6513

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 3; Position: 955925 [Map]; Strand: c
- AT3G03776.1 - [+] show detail - hydroxyproline-rich glycoprotein family protein
  Distance: -1165; Region: intergenic
- AT3G03780.2 - [+] show detail - methionine synthase 2
  Distance: -1160; Region: intergenic

TACGACGTTT TCATCCCTAT TCGGAATAGA CCGATGTTGG ATATTGTGAG 
GAAATATAAA ATTTACCGGA TACAAATATT TCTGTGTTTT GTTTTGAAAT 
TTGAAGTTAC TTGTTAAGCG TCTTGATGGA TTAAAGTTTT TTGAGTCCAA 
AAACAAAAGA ACGGACTTTC TCATGTGAAA GCATTAAAAA AAAGAGTTCT 
TGCTACAAAA CAAGTTACAA GAGATGGTAG AAATACACTT CTTTATTCGA 
AACATAGAAT TTTCATCTCA CTCGACGAAA CAGAGCATTG AATATTCTTT 
ACTGAACTAG TTTACCATTT CATACTAAAC TTCTTTACAT ACATTATAAA 
CGTATATTCC TCATTAAGGT GAATATTATG A

AT3G03776.1

Model type: Protein coding
Short Description: hydroxyproline-rich glycoprotein family protein
Computational Description: hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 915 Blast hits to 647 proteins in 148 species: Archae - 2; Bacteria - 101; Metazoa - 200; Fungi - 102; Plants - 326; Viruses - 60; Other Eukaryotes - 124 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G03780.2

Model type: Protein coding
Short Description: methionine synthase 2
Curator Summary: Encodes a cytosolic methionine synthase, involved in methionine regeneration via the activated methyl cycle (or SAM cycle)
Computational Description: methionine synthase 2 (MS2); FUNCTIONS IN: 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, methionine synthase activity; INVOLVED IN: response to cadmium ion, response to salt stress, methionine biosynthetic process; LOCATED IN: cytosol, apoplast, plasma membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, seedling growth; CONTAINS InterPro DOMAIN/s: Cobalamin (vitamin B12)-independent methionine synthase MetE, N-terminal (InterPro:IPR013215), Methionine synthase, vitamin-B12 independent (InterPro:IPR002629), 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase (InterPro:IPR006276); BEST Arabidopsis thaliana protein match is: Cobalamin-independent synthase family protein (TAIR:AT5G17920.2); Has 4511 Blast hits to 4499 proteins in 1700 species: Archae - 186; Bacteria - 3291; Metazoa - 14; Fungi - 208; Plants - 251; Viruses - 2; Other Eukaryotes - 559 (source: NCBI BLink).
Link: InterPro Scan - TAIR