ET6543

CSHL Arabidopsis genetrap mutant lines

Original: ET6543

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET6543

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 8379013 [Map]; Strand: c
      • AT4G14605.1 - [+] show detail - Mitochondrial transcription termination factor family protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: ET6543 - 3-prime edge 
    CCCTATTTGC AGAGCACAGC TTTGGTTTAC GGGAAGACTC TCTTTTAGAC 
    AAGAAACAAA TGGTGAGTGA ACCAAAATAA TACAATGGAG AAAATGAATC 
    TTATCTCTTT TTTTCACAAT TTTTGAAAAC AATATGGTTT CATAACGATG 
    TTGTTTTTTA TAGGGATTCG TTTAAAGAAT AGAGTAGAGT TTAGTCCAAG 
    ACCTGTACCT CCAAATCTGA TCGCAGCAGA GAAAGAAGAA GCTAAAGCTG 
    TTTTAACTCT ATTCTTCAAG AAGCAAGGTC TTAGCAACAG TCTCTCTTCT 
    CGGTTAATCA ACAAATCCGA TCTATTCATT GACCATTTAG TGTCCAGGCT 
    CCATTCTGTT CATAAAGCTC GATAACTCGT AGGTTCGATC TTTCTTCTTT 
    AAAACCTTTA CTATTTAATG AGAAGAGCTC GGCGATGAAC TCTAAAAGTT 
    TGACTGTAAC AGGAAGAGAG CTTACTACAC TTGAGATTCG AGATTCTCTC 
    ATTCCTTACC TCGAACAACT TCATGAAGAA CATGGTGATC TTCTCGCTGA 
    GCTTGTTGTG AGCTTCCCTG ATCCACCAGC TGAACCTAGA CTTGTTGCTT

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: ET6543 - 3-prime edge 
    AAAATGAATC TTATCTCTTT TTTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 8379120 [Map]; Strand: c
      • AT4G14605.1 - [+] show detail - Mitochondrial transcription termination factor family protein
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: ET6543 - 3-prime edge 
    TTTTTTCCCC AATTTTTGAA ACCAATATGG TTCCTTACCG AGGTGGTTTT 
    TTTTAGGGAT TCGTTTAAAA AATAAAGAAA AGTTTAGTCC AAAACCTGTC 
    CCTCCAAATC TGATCGCAGC AAAAAAAGAA AAAGCTAAAG CTGTTTTAAC 
    TCTATTCTTC AAAAAGCAAG GCCTTACCAC CAGTCTCTCT TCTCGGTTAA 
    TCAACAAATC CGATCTATTC ATTGACCATT TAGGGTCCAG GCTCCATTCT 
    GTTCATAAGA GTTCAATACC TCGAAGGTCC AATCTTTCTT CTTTAAAACC 
    TTTACTATTT AATGAGAAAA GCTCGGCGAT GAACTCTAAA AGTTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 8379486 [Map]; Strand: c
      • AT4G14605.1 - [+] show detail - Mitochondrial transcription termination factor family protein
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: ET6543 - 3-prime edge 
    ACTACACTTG AGATTCGAGA TTCTCTCATT CCTTACCTCG AACAACTTCA 
    TGAAGAACAT GGTGATCTTC TCGCTGAGCT TGTTGTGAGC TTCCCTGATC 
    CACCAGCTGA A

AT4G14605.1

Model type
Protein coding
Short Description
Mitochondrial transcription termination factor family protein
Computational Description
Mitochondrial transcription termination factor family protein; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT2G21710.1); Has 1482 Blast hits to 884 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 114; Fungi - 0; Plants - 1279; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink).
Link
InterPro Scan - TAIR