ET6559

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

semi-sterile

Anatomical entity /structure development stage	Phenotypes
seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997)

Original: ET6559

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence

Chromosome: 4; Position: 11126815 [Map]; Strand: w
- AT4G20740.1 - [+] show detail - Pentatricopeptide repeat (PPR-like) superfamily protein
  Distance: 0; Region: exon1 (CDS)

TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCTGCCCTA GGCTTAAACC 
CAAACTTCTT CATCTTCTCG TAAACGTAAT AAACCCTTAA ACCTCTTCTA 
TTATCAGCGT GCATTCTAAT CAAAATCTCA AATTGTTTCT CCGACGGTGG 
TCTTCCCTGA GAATCCATAA GCTCAGGTAA CTGATCCGCA GCACGAAAAT 
GTCCGTTTCG ATTAAGGCAA TAAGCAAAAG CATTGTAAGC AGCGAAATCG 
TGTTTATACC CTTTTTGTTT ACCAGCCCAA TGAAAGAACT TAGCCGCGAC 
TGCAGCATCG TTACCTAGTT TCAAAACCTC GGCGACGATA CTTGGTGTGA 
CGCGGCGGAG TTTGTTTAGC TCGGAGACCA CTGAGGGACC CCAATGGTTA 
CGGTTCTTAC GGAATGCGTC GAGGACGAAT CTCGCGATTG GAGATAGACG 
CTCGGAGGCG GCGGAGATCA CCGTGGAATG TGACGGCGGA GAAGGAGGAG 
GGAGATGGGT TTCTGGATCC CATTTGCGGA GATCGAAAGG TGTTCGGTGA 
GCGAGGGAGT TGGATTGTGG TTGGGGTGAG ACTCTGGGTA TAGATTGGCG 
GTTG

3 prime edge [+] show sequence

Chromosome: 4; Position: 11126812 [Map]; Strand: w
- AT4G20740.1 - [+] show detail - Pentatricopeptide repeat (PPR-like) superfamily protein
  Distance: 0; Region: exon1 (CDS)

TTTACCGACC GTTACCCACC GTTTTCATCC TGCCCTAGGC TTAAACCCAA 
ACTTCTTCAT CTTCTCGTAA ACGTAATAAA CCCTTAAACC TCTTCTATTA 
TCAGCGTGCA TTCTAATCAA AATCTCAAAT TGGTTCTCCG ACGGTGGTCT 
TCCCTGAGAA TCCATAAGCT CAGGTAACTG ATCCGCAGCA CGAAAATGTC 
CGTTTCGATT AAGGCAATAA GCAAAAGCAT TGTAAGCAGC GAAATCGTGT 
TTATACCCTT TTTGTTTACC AGCCCAATGA AAGAACTTAG CCGCGACTGC 
AGCATCGTTA CCTAGTTTCA AAACCTCGGC GACGATACTT GGTGTGACGC 
GGCGGAGTTT GTTTAGCTCG GAGACCACTG AGGGACCCCA ATGGTTACGG 
TTCTTACGGA ATGCGTCGAG GACGAATCTC GCGATTGGAG ATAGACGCTC 
GGAGGCGGCG GAGATCACCG TGGAATGTGA CGGCGGAGAA TGAGGAGGGA 
GATGGGTTTC TGGATCCCAT TTGCGGAGAT CGAAAGGTGT TCGGTGAGCG 
AGGGAGTTGG ATTGTGGTTG GGGTGAGACT CTGGGTATAG ATTGGCG

5 prime edge [+] show sequence

Chromosome: 5; Position: 4823483 [Map]; Strand: w
- AT5G14900.1 - [+] show detail - helicase associated (HA2) domain-containing protein
  Distance: 0; Region: exon1 (CDS)
- AT5G14910.1 - [+] show detail - Heavy metal transport/detoxification superfamily protein
  Distance: -231; Region: promoter

TCACCTGTCT TTGTCAAGTT ACAGTCATCA TCAAGTGCTC CCAAATGATA 
CAAATCGTCC AAGGCCCGAG CGAGGGTATC AGGAGCAGGA GAATCTATAA 
GATCGAAGCG TACCAAGTTT TTCACACTAA GTCCTTTCAA GGTCAGAACT 
GTGTTTGCAA GGTTTGTCAT TGTCATTAGC TAAAATTATC CTTTTTGATG 
GTCAAAAATT ATATTACTCC ATGAATTTAT GAACCTTCTG ACAGAAAGAG 
AGCTTTCCTC AAGGGTATTT ATGTCTTTTT ACAGGCTTGC TTCGAGTGGA 
TAATGTGAGA AAAGAGCAAA ACACAAAAAT GAAAAAACCT TCTTC

AT4G20740.1

Model type: Protein coding
Short Description: Pentatricopeptide repeat (PPR-like) superfamily protein
Computational Description: Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G06710.1); Has 37034 Blast hits to 11477 proteins in 267 species: Archae - 10; Bacteria - 18; Metazoa - 245; Fungi - 473; Plants - 35231; Viruses - 0; Other Eukaryotes - 1057 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G14900.1

Model type: Protein coding
Short Description: helicase associated (HA2) domain-containing protein
Computational Description: helicase associated (HA2) domain-containing protein; FUNCTIONS IN: helicase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), Domain of unknown function DUF1605 (InterPro:IPR011709); BEST Arabidopsis thaliana protein match is: RNA helicase family protein (TAIR:AT3G62310.1); Has 5771 Blast hits to 5717 proteins in 1127 species: Archae - 0; Bacteria - 1821; Metazoa - 1566; Fungi - 1074; Plants - 520; Viruses - 0; Other Eukaryotes - 790 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G14910.1

Model type: Protein coding
Short Description: Heavy metal transport/detoxification superfamily protein
Computational Description: Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR