ET6564

CSHL Arabidopsis genetrap mutant lines

Original: ET6564

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
  • narrow rosette leaves
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
rosette leaf (PO:0000014)
  • decreased width (PATO:0000599)

Original: ET6564

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10687 [Map]; Strand: c
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: -323; Region: promoter
      • AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: -232; Region: promoter
    Flanking Genome Sequence: ET6564 - 3-prime edge 
    GANNNNTGNG TNTNCNTCAC GACCGTTTAC ATCCCTGACC TGAAAAGCAT 
    TCCAANCANA AATTGCTTAC GTGGACATTT TAAAGACATC TGTTCAATGG 
    TCATTGGTGA CTGACTNCAA TGAAAATTAC ATTGCAACAA TAGCCAAGTA 
    TCACAGAAAG TTACATTGCA ACAATTTCCA CGTCAAATTT CTAAACATGC 
    ANAACGGTAA TTTACACGGG GAAGGCGCTG AGGAGGCGGA GGGTGCTACG 
    GAGGGGATCN CAGGAACACC GATGAATGAG AAGAATCCAG AGGCGGCATG 
    ATCTTGCTCG TCGAGGANAG TGGATGATGC TCTATAAACG GCCAACAATA 
    TGGTCGACGT ACACCTAAAA TGTCTTGCTA CGTGGATGCA CCACTAAACC 
    TTTCAACTTT TTTGTGTTTT CTTTNCTTAA TTNAACACAA GATTAATTAG 
    GAAATTTTGT GTTTCGTTCC GTTTCNTTTC NATTTCTGGT TTCTTGTTTC 
    TATTACTCAC ATTATTGCTC NAGTGTTAGG TTTGCNTNTA TCTATCCTTG 
    TTTTTTCCGT GATTATGTAA TTTAATTGGC CCTTGTANTC AAAATTTTTG 
    TAACCTTGAT GGCTCGGGGA AACTCATAAA GAAAATTGGT CCCNGTTNCA 
    TTCTCCNCTG TCTTACTGAT ACCANAAACA CCGTTTGATC CATAANTGCC 
    TCTATTGTTA TACTTGGATG CTTCATNATA TATGCATTCN CCATGTCTCT 
    GTTTCATGTT TTACNCCNTA AAAATATTAT CANNCCTCNA ACTTGAATTC 
    CGGTTCAAAA TCCTANACNT CCCCAANAAG AACATTNACN CCCNTTTAAA 
    ACT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10601 [Map]; Strand: c
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: -237; Region: promoter
      • AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: -146; Region: promoter
    Flanking Genome Sequence: ET6564 - 5-prime edge 
    TNNTTCNTCG AGCATTTTTA CCTCAATAAA AGGCCGTGGC ATTAACTCAC 
    TTGTCTTGAG ACGTTATGTC GTTAAAACCA AGCCCAAAGT TAATTTCGGC 
    CCAAATCGTT TTCAACTTTC CCGCCGTCTT TTAACTTTTT AGATTTTTGG 
    TGATGGTTTT GGGGGGAAAG AAAACAGAAA ATATAAAAAT AAAATTTCCG 
    CACTCCCGAC TCTTGGTGTG GTAGGCAATT CTGAATCGCG AGGTTTAGTT 
    CTCCGGCTGA ATCAGAGAAC GACGAGTCGG AAAAATTCGA AACCCTAGAA 
    CTGAATAAAT GTCGACGTGG CAATTATTTC CCGATTCCAG CGGCGATGGT 
    TTCCGGTGGG AAGTCGCTGG CCGGATTCTT CAGTCCGTCT CGGATTCTAC 
    GCCAACCAAG GCGCTCGAAT CNACAGCTCC TCTACCTTCT ATGGCCGATC 
    TCTTGCTCCA AGGTGATTCT TCGTTTCTTC CTTTTTTTGT CGAATCGTGT 
    TTGTCATGTG ACTCAAAGGA NATTGAATTA TTATTTGATG CTTCAAGGAT 
    GCTCGAAGCT TATAGCACGG GAANAAACGA TGCCTGGGGA AATCCCAATG 
    TTCAGGACTG GGCTAGGGAA TTCTGTATTT CTTAAAAATT CTTCAATTGC 
    TAAAGCCAAA TCCATTTTAN CAAAAAAGGT TACTTACTCA GGTACTTTAT 
    NTGACAGTAT TGAATTCCCT TGACTAGTCA TTTGTTTCTG AATTCCCTTG 
    AAATTGTTAC TTAATGTTTG GTGAAAAATN GGTTTCCTGA AAAATCTTTT 
    GAAATNTTCC ATGTTTCTTG GGCTACCCTT TAAAATTTGC GGAAC

AT4G00020.1

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00020.2

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 319 Blast hits to 211 proteins in 92 species: Archae - 0; Bacteria - 11; Metazoa - 140; Fungi - 22; Plants - 61; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
Link
InterPro Scan - TAIR