ET67

CSHL Arabidopsis genetrap mutant lines

Original: ET67

Phenotypes

Morphological phenotypes

Original description

  • no cotyledons
Anatomical entity
/structure development stage		 Phenotypes
cotyledon (PO:0020030)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET67

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2992265 [Map]; Strand: w
      • AT3G09750.1 - [+] show detail - Galactose oxidase/kelch repeat superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET67 - 3-prime edge 
    AAGAAGCNGA CGTTTTCATC GGAAACCTGA TAAAACCATA ACCGGTAAGG 
    AGAGTGGTTA TGCTTTGGCT AGAGTCCCAA TCCCGCATTC TCCTAATGTA 
    CGATTTTCGA GTCTCGTGCG GTTGGCTCTG ATATCTACAA CAATGGGGTA 
    AGCCAAGATA GGTTCAAGTT AAGAGCTTGC TCCTCGAGCG TCTCGATTCT 
    GGATTGCCGG TCTCACACGT GGCGCGAAGC TGCAAGCTTT CCGGTGGAGC 
    TCTATGATGC TTCTGCTGGC GTCCTTTATG GAAAGATTGA TGTAGCAGGA 
    AATTCCCCAG ATAGGAACTC CATGACGAAA TCTGTCGAGG TGTTCAAGTT 
    GGACATAAAA ACACNAGTTN GGGATCCTGA GCCTATCCAT TGCGGAGAGA 
    CAAAATATCA TTATATGGAA GCTAGGAGAG ATCGAAAGCT CTGGTGAAGC 
    TAGGAGAGAT CGAATCAAAC TATTTAGAGA TGTGACAACA GATTGGTCAT 
    CTAATCTGGT AATTCGGGTT CCAGGACNAG GATCGCCAAG TGGCCATCGT 
    TGCTTCTTCT TTTTCTTCCC TGTGGCTGTT GATATATTTC GAGGACATTA 
    TGATGAGATT TTAATTTCAG TGTCTTGATT GTTAATTCTG TTTGCTCAAG 
    ATCTGTCACT GATCTTTGAA AATTAAAATT TGGCTTGATT TTANANTAAA 
    TAAAAAATCA TATTTTGGCT GGGAAAATAA TAACACNNTT GCCGCCAAAC 
    ACAGCAATCC AATTTAGTTT GAACNCACAT TTTTTGN

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10883959 [Map]; Strand: c
      • AT4G20140.1 - [+] show detail - Leucine-rich repeat transmembrane protein kinase
        Distance: -238; Region: promoter
    Flanking Genome Sequence: ET67 - 5-prime edge 
    CTCNCACCTT TTTTGTGTTT CTTTTTTGCT ATTTCACTGT TTTATTGAGA 
    GATCTAGAGA GAGAGGCGAG AGGGGTCAAA GAGAGGTCAG AGGAGANATG 
    TGGGGAAATG GAATGGGAAG GCTCGTANAA TGAAAATGTT TCGGCTTTTA 
    GCCTTTTATC AATCAATGGA GGGGCAAAGG TCAACGGTCG TACTATGATG 
    TTCGTGTGTA CATTTATTCG TCCGTGGAGA CATGTTATAT AATTAAAACA 
    GTGCCTAAAC TTTGACATAA CATTTGGTCT TCTTAGGAAA GAAAAAAAAA 
    AANCCTTTGG

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2992387 [Map]; Strand: w
      • AT3G09750.1 - [+] show detail - Galactose oxidase/kelch repeat superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET67 - 5-prime edge 
    TTAGACCATT TTCCATATCG AAGCAAACAT AGAGACAACT CTCTGTGCGG 
    CCCAACTGTG ACCTTACCTT GTAAAGCTCT GGTGAAGCTA GGAGAGATCG 
    AAAGCTCTTG GAGACGAGTG AGAGACTCAT AGTACAATCT TGGGATGCAT 
    GCGACGATGT GCATTAGAAA ATCATAGGGA ATTGACGGAT TATGAGTCAA 
    TTCCGGCGTC GACGACAGCT GCTTCTGCTT CTTCTTCGTA ATCGTCTTCT 
    TCATCTCTCT CGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2992380 [Map]; Strand: w
      • AT3G09750.1 - [+] show detail - Galactose oxidase/kelch repeat superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET67 - 5-prime edge 
    AACCAGTTTA GAGCATTTTC CATATCGAAG CAAACATAGA GACAACTCTC 
    TGTGCGGCCC AACTGTGACC TTACCTTGTA AAGCTCTGGT GAAGCTAGGA 
    GAGATCGAAA GCTCTTGGAG ACGAGTGAGA GACTCATAGT ACAATCTTGG 
    GATGCATGCG ACGATGTGCA TTAGAAAATC ATAGGGAATT GACGGATTAT 
    GAGTCAATTC CGGCGTCGAC GACAGCTGCT TCTGCTTCTT CTTCGTAATC 
    GTCTTCTTCA TCTCTCTCG

AT3G09750.1

Model type
Protein coding
Short Description
Galactose oxidase/kelch repeat superfamily protein
Computational Description
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT5G51250.1); Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20140.1

Model type
Protein coding
Short Description
Leucine-rich repeat transmembrane protein kinase
Curator Summary
Encodes GASSHO1 (GSO1), a putative leucine-rich repeat transmembrane-type receptor kinase. GSO1 and a homolog GSO2 (At5g44700) are required for the formation of a normal epidermal surface during embryogenesis.
Computational Description
GASSHO1 (GSO1); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, transmembrane receptor protein tyrosine kinase signaling pathway, embryo development, epidermis development; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase (TAIR:AT5G44700.1); Has 301150 Blast hits to 144127 proteins in 5007 species: Archae - 193; Bacteria - 28594; Metazoa - 96322; Fungi - 11667; Plants - 129816; Viruses - 411; Other Eukaryotes - 34147 (source: NCBI BLink).
Link
InterPro Scan - TAIR