ET6872

CSHL Arabidopsis genetrap mutant lines

Original: ET6872

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET6872

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 226649 [Map]; Strand: c
      • AT5G01590.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon5 (3UTR)
      • AT5G01595.1 - [+] show detail - other RNA
        Distance: -375; Region: promoter
    Flanking Genome Sequence: ET6872 - 3-prime edge 
    GATAGCAACT CCAAAAAAGA TTGAAGCAAA GTCTTCACCA GGTGGATGAC 
    AACAAGCAAA ACATCCTGTT GTTTATGAAT TCTTGGCCAG CAATGTCGGT 
    GTGTGGTTGA TCTGGTTATC NCATTTAGGT ACACACCACA TGGTTTTGGG 
    CGTCTCCTGT AACATGGTTT GTTTGTTTTC TACCTGTTTT AAACCAACGT 
    TCGACATTGA GAGTTTATCA GAAAAAGAGG AACTGTTTCA TTAAATATTC 
    TATGGGCTTA CATGGGCTTA TGAATTTATC TCGACAGACA TTAAATATTC 
    TATAAATGGG CCTCAGTTTG TAAG

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 226414 [Map]; Strand: c
      • AT5G01590.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon5 (CDS)
      • AT5G01595.1 - [+] show detail - other RNA
        Distance: -610; Region: promoter
    Flanking Genome Sequence: ET6872 - 5-prime edge 
    TTTGTCATAA TCTTTCTGAA CTTTGTCCAT TATAGTGTCA AAACCCGGGA 
    CTGTGCTCTC CAGCTTCTGG CCTACTCGAA CACTCAGGTT GTAGAAAATC 
    CGGAATAGCC TCTGCAAACA GAAAGCAAGA AACGGAAGAG AAAAGATGAA 
    TCAATTTATC ACAAAGATAC AGTGAGTGTT TAAAAGTTTG TTGTTTGTGA 
    AATCAGAAGA AAGGAGAGGA AACTTACCAT GACACTCCTA TTCCACTCTC 
    TGATATAAGG AGGACCAGTG GTGTAGGTAC CAAGCGGCTC ACGGTACCAC 
    TCTCCACCAT AGCTGATCTG ATCCATAGCT TGCTCGATAC TTATCACTTC 
    CCATGGCCTT AACCCTGGTA TTACTTTGGC CAACTCTAGT CTACAATCAA 
    AAGCACATGT TTCGAGAGAA GAATCAAATC CAATTGCGGC TAAACAGTCA 
    AT

AT5G01590.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 60 Blast hits to 59 proteins in 31 species: Archae - 0; Bacteria - 20; Metazoa - 1; Fungi - 2; Plants - 33; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G01595.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT5G01600
Link
InterPro Scan - TAIR