ET6906

CSHL Arabidopsis genetrap mutant lines

Original: ET6906

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET6906

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17948066 [Map]; Strand: c
      • AT4G38310.1 - [+] show detail - Galactosyl transferase GMA12/MNN10 family protein
        Distance: -416; Region: promoter
      • AT4G38320.1 - [+] show detail - heptahelical protein 5
        Distance: -626; Region: promoter
    Flanking Genome Sequence: ET6906 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCC CTACTTCAAA GTCAAAGTCT 
    TAACACTTGC CATAAATGTT TCGATAGTAA TATCAATTTT ATATTAGGAG 
    AAAAACTAAA AACTATTAAA TCTGTGTCAG AATTATAATA ATCCCTTTAT 
    CTTACCATAC ATTTAGTTGA CTCACATTTT TACTTCATCA CCCAACTGTT 
    CTCAGAGTTT TACTGAAATT TCTCATCTTC TCTAATCACT GCATTGTAGA 
    TTCTCAGTCA CATTCTCAGT CACATGACAT CATCTCCGAT GGGAAAACAC 
    GGCGGGTCAA AGACTAGAAC CACCGTTTGT TTATCAGATG GTGTTATCTT 
    TCTCGCCGGA GC

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17947974 [Map]; Strand: c
      • AT4G38310.1 - [+] show detail - Galactosyl transferase GMA12/MNN10 family protein
        Distance: -508; Region: promoter
      • AT4G38320.1 - [+] show detail - heptahelical protein 5
        Distance: -718; Region: promoter
    Flanking Genome Sequence: ET6906 - 5-prime edge 
    CAGGTTATTA ATGCACACGA TTTATGTATA GAATATAATC GTTTGAGAAT 
    TTCCACTAAT TAAAGTTCTC TCTAACTAAT TATTTCCATA TAAATCTGAG 
    CCATAATGCT CAAAAATATT AAAAGGATAA ATATCATTTA CATATATTTT 
    TTTTACAATT TATTTGAATT TTTTTTCCTT CTAAAAGCTT TATAAGTATC 
    CAGAAACCAG AATCACAATC GTTGTTTACA GCAAATATAT ATATTTTACA 
    GAAACAAATG AATTTCTAAA TTAATTACTT GAATGCTAAA TATACTTTTA 
    ATATAATTTG AGTTCCGTCA AAGCCCATTT ATGGCCCACG TATAAACGTC 
    GCCGTTTCAC TCCGACTCTT CACCTCCGAC CAGGAAGTAA TCCCGGAATT 
    TGTCACTCCG ATGAAAATGG AGGCCTCTGG CCTCTGCTGT TTATGCATTC 
    TGG

AT4G38310.1

Model type
Protein coding
Short Description
Galactosyl transferase GMA12/MNN10 family protein
Computational Description
Galactosyl transferase GMA12/MNN10 family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: Galactosyl transferase (InterPro:IPR008630); BEST Arabidopsis thaliana protein match is: Galactosyl transferase GMA12/MNN10 family protein (TAIR:AT4G37690.1); Has 254 Blast hits to 254 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 254; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38320.1

Model type
Protein coding
Short Description
heptahelical protein 5
Curator Summary
heptahelical transmembrane protein HHP5
Computational Description
heptahelical protein 5 (HHP5); FUNCTIONS IN: receptor activity; INVOLVED IN: response to hormone stimulus, response to sucrose stimulus; LOCATED IN: integral to membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Hly-III related (InterPro:IPR004254); BEST Arabidopsis thaliana protein match is: heptahelical protein 4 (TAIR:AT4G37680.2); Has 2557 Blast hits to 2136 proteins in 523 species: Archae - 0; Bacteria - 635; Metazoa - 1083; Fungi - 463; Plants - 198; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink).
Link
InterPro Scan - TAIR