ET6916

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

semi-sterile

Anatomical entity /structure development stage	Phenotypes
seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997)

Original: ET6916

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 5; Position: 22459501 [Map]; Strand: c
- AT5G55400.1 - [+] show detail - Actin binding Calponin homology (CH) domain-containing protein
  Distance: -551; Region: promoter

TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTACTTA ATCAGAATCG 
CGAGTAGGGT TTTGTTTGGT TTTATATACT CGCTGTCTGA TGACGACATG 
TGGAAGAAAC AGTGGACCTC ACGGTTTAAC GACTTGTGTA GGTGTCATTT 
CTAAATAGAG AAGAAGACTA CACAAAAAAT TTGTATGCTT TTGGACTCTT 
AAATGTTTTT CTATGTATTT ACTTCGTTAG TTCGTTACAT AAATTTAAAA 
ATGACAGTAC TAACCATATA TAGCTGAGTT ATTTTCGGAA GATATTTGAT 
ATTCTCAAGT GATATTTATT GCAAAATACC CTAATTTTTT TGTTTACTTA 
TTTTTTTGGA AATTTAGATT TTATGAACGA AACAAAGATC TTCTCCACCG 
ACGTTTTAAA TATTTTGCTG ATTTGTTTTT AAACCCCATG TGTGGTACGC 
ACGACGGCCT AC

5 prime edge [+] show sequence

Chromosome: 5; Position: 22459412 [Map]; Strand: c
- AT5G55400.1 - [+] show detail - Actin binding Calponin homology (CH) domain-containing protein
  Distance: -462; Region: promoter

ATTCAATTTC ACAACCAGAA CTCGTTTTCT CTCTCTCTCT CTCTTTGTTT 
GCTCTCGCAC GAAGCAAATA ACGATCCTCT CTCTTCTCTG CCTATCATCT 
TCGTTCACAT TGTGGTTCGA TTCTTGCTTC CTAGTTTTCT GGAAGAAAGA 
AACATTATCA TCGATTAAAA TATACACATT GAACAACTTT GGATTATTGA 
TTCTAAGCAG AGAAGAATCT CATTTCGATA CATTGGGGTG TGTGTTTTAT 
TTTTATTATT CTCCTAGATT TCTGGATTTT GTGTAATCGA AAGTCACCGG 
CTTTTTTCCT AATCTATCTG GAAAACTGTT AAAAGTTTGA ATCTTGCTGT 
AATGTTTTTT GATTAGTTAA GAACAACATT GCTATTTTAA GTAATGAAAT 
CTTTCGATCG ATAAAATTGG TTTCTTTTCG TTTTATCTCA AAGTTTTGAT 
TTTTCTGATT TTTTCTTGGC AGGGAGAAGT TCCTACATTG GTGTGAGTGT 
GAAGATTATC TTCCCCGTGG ATTGTAACGG GGGAGATGTC TG

AT5G55400.1

Model type: Protein coding
Short Description: Actin binding Calponin homology (CH) domain-containing protein
Computational Description: Actin binding Calponin homology (CH) domain-containing protein; FUNCTIONS IN: actin binding; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Actinin-type, actin-binding, conserved site (InterPro:IPR001589), Calponin-homology (InterPro:IPR016146), Calponin-like actin-binding (InterPro:IPR001715); BEST Arabidopsis thaliana protein match is: fimbrin 1 (TAIR:AT4G26700.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR