ET6999

CSHL Arabidopsis genetrap mutant lines

Original: ET6999

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET6999

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26284926 [Map]; Strand: c
      • AT1G69820.1 - [+] show detail - gamma-glutamyl transpeptidase 3
        Distance: -690; Region: promoter
    Flanking Genome Sequence: ET6999 - 3-prime edge 
    GGTAGGGGTA TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTATCAGTT 
    GGACCATAAA TAATAATAAT AAAACGGAGT CCTTAACCAA CTAAACCAAC 
    ACATATTAAT TATGAGTATC GTCACACGTA CCTAGTCTAC TAGAAAAGAT 
    TTAGGGTACA TAACTAAACA GAGAGAGAAA CACGTCACAT CTATGAACTA 
    GAGTTGATCG AAGTTCACCT GTCTATTTTC ATTAAACGCT AGCTATACTC 
    TTATAAATGG TGGTTGGTTT AGAGCATCCT TATTTGTAAG TTCTTAGATT 
    AGTTTTTAGG ATAAGAACAT CTCATTTTAA CTTTTATATA AGAGACAAAA 
    TATCATTTAA AATGTCTCTT ATGTAAGAGT TAAAATGAGA TGTTCTTAGT 
    AATTAATGAC AAAAAGAAAA TCCTAAGAAC TAATATAAGA ACTTACCAAC 
    AATGATGCTC TTATATTATA CTATTTTTTT CTTCAGTTTA AATGATGTTT 
    AACTAAATCT AGGTAAAATT AGTAAAATCT TTACTCGTTT AGCCCTATTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26082990 [Map]; Strand: w
      • AT5G65260.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
        Distance: 0; Region: exon1 (5UTR)
      • AT5G65270.1 - [+] show detail - RAB GTPase homolog A4A
        Distance: -338; Region: promoter
    Flanking Genome Sequence: ET6999 - 3-prime edge 
    AAGCGTTTTC AGAAAAAAAC AAAGCAAACG TCGCGACGGA GAGAGAGCGA 
    GAGAGACGAT GGAGGAAGAT GAGCACGAGG TTTACGGTGG TGAAATTCCA 
    GACGTCGGAG AGATGGATGG AGATATGGAG GTTCTCAACC CCGATTTGGA 
    TATGGCTGCT GCTGATGATG ATGCGGTTAA GGTCTACTAT TATCTCTTTC 
    TCTCTTGCTG TTTTGCTCAT CTTTATTTGA CTGAGCTCGA TTGATTTGTT 
    ATCGCGTGTA TATGTGTTTG ATTGTTGTGT TATTGCTGTT GTAATTCTAG 
    GAGTTGGATG AAATGAAAAA ACGATTGAAA GAGATGGAGG ACGAAACTGC 
    TGCTCTGCGT GAGATGCAGG CTAAGGTCGA NAAGGAAATG GGAGCTCAAG 
    GTTTTCGTCT CTTTGATTTG GTTTTGCTAT AACTCGCTTC TTTGATATGA 
    TTATCATCGT GCTTCCCGCA ATTCGC

AT1G69820.1

Model type
Protein coding
Short Description
gamma-glutamyl transpeptidase 3
Curator Summary
Note that conflicting nomenclature exists in the literature: At1g69820 is named as GGT4 in Plant J. 2007 Mar 49(5):878-88; and as GGT3 in Plant Physiol. 2007 Aug 144(4):1715-32.
Computational Description
gamma-glutamyl transpeptidase 3 (GGT3); FUNCTIONS IN: gamma-glutamyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Gamma-glutamyltranspeptidase (InterPro:IPR000101); BEST Arabidopsis thaliana protein match is: gamma-glutamyl transpeptidase 1 (TAIR:AT4G39640.2); Has 6281 Blast hits to 6278 proteins in 1408 species: Archae - 41; Bacteria - 3599; Metazoa - 569; Fungi - 275; Plants - 85; Viruses - 0; Other Eukaryotes - 1712 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G65260.1

Model type
Protein coding
Short Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G10350.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G65270.1

Model type
Protein coding
Short Description
RAB GTPase homolog A4A
Computational Description
RAB GTPase homolog A4A (RABA4a); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A4B (TAIR:AT4G39990.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR