ET7217

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

embryo lethal

Anatomical entity /structure development stage	Phenotypes
seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997)

Original: ET7217

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 4; Position: 11023485 [Map]; Strand: w
- AT4G20440.3 - [+] show detail - small nuclear ribonucleoprotein associated protein B
  Distance: 0; Region: exon1 (CDS)
- AT4G20440.1 - [+] show detail - small nuclear ribonucleoprotein associated protein B
  Distance: 0; Region: exon1 (CDS)
- AT4G20440.4 - [+] show detail - small nuclear ribonucleoprotein associated protein B
  Distance: 0; Region: exon1 (CDS)
- AT4G20440.2 - [+] show detail - small nuclear ribonucleoprotein associated protein B
  Distance: 0; Region: exon1 (CDS)

GTACGGCGAT CTTCACGTTC CTCGTTGATC TTCTTCCCTT TCGCTGGTGG 
AAGCTTACGA AACTCCTCGC AATCGCCGAG AACGAGGTTC ATGTGACGGT 
CGAACGCCAT GAACTTCCCA ACGAGCTGTC TTCCGTCTTG GATCGTCACT 
CGCATCCTGT AGTTGATGAA CTGAAGCATC TTTGAACTCT TCGACATCGA 
CATTCTTGCC GATTGAACAG TAACACTCGC TACAAGCAGA GATTCGGCGG 
CGAAATCGAG TACGCCGGAG GATCAAAATC GAGCTTAGGG TTTCAAAAAA 
CTAAATCGAG AGGCCAAAAT TGGGGGTTTT TGGCTGTGCA AATCGGGAAG 
TGGGAAATTT CTAGGGTTTA TAAATGAATA CACTCTTGTT TATGGGCTTA 
CTTTCATTAT GGGCCCAAAA ATATTGGACT TGGGCTGCAA TTAGTTGAAT 
AGGCTACAAT ATTTGTTAGT TTGAGGCTCC AAGTTTCACT AAGCTTATTT 
TATGGAGCAA ATCAGCAAAT GTCAAAGTTT AATCGGGAAC AAATGTGTAA 
AGTTCAACAA GATTAAAACA AATCTGATAC ATTGAATAAG GAAATATTTT 
GTTATTCAAA ACACACGTGT ATTCCTGAAC TTGGCATGAA CTAGCGTGCA 
TCAGGAATAT GTTC

AT4G20440.1

Model type: Protein coding
Short Description: small nuclear ribonucleoprotein associated protein B
Computational Description: small nuclear ribonucleoprotein associated protein B (smB); CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Small ribonucleoprotein associated, SmB/SmN (InterPro:IPR017131), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT5G44500.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G20440.2

Model type: Protein coding
Short Description: small nuclear ribonucleoprotein associated protein B
Computational Description: small nuclear ribonucleoprotein associated protein B (smB); CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Small ribonucleoprotein associated, SmB/SmN (InterPro:IPR017131), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT5G44500.2); Has 66876 Blast hits to 32698 proteins in 1298 species: Archae - 65; Bacteria - 8752; Metazoa - 34794; Fungi - 7169; Plants - 8402; Viruses - 1350; Other Eukaryotes - 6344 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G20440.3

Model type: Protein coding
Short Description: small nuclear ribonucleoprotein associated protein B
Computational Description: small nuclear ribonucleoprotein associated protein B (smB); CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Small ribonucleoprotein associated, SmB/SmN (InterPro:IPR017131), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT5G44500.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G20440.4

Model type: Protein coding
Short Description: small nuclear ribonucleoprotein associated protein B
Computational Description: small nuclear ribonucleoprotein associated protein B; INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: nucleoplasm, Cajal body, nucleus, small nucleolar ribonucleoprotein complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Small ribonucleoprotein associated, SmB/SmN (InterPro:IPR017131), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT5G44500.2); Has 66867 Blast hits to 32689 proteins in 1295 species: Archae - 65; Bacteria - 8747; Metazoa - 34794; Fungi - 7165; Plants - 8402; Viruses - 1350; Other Eukaryotes - 6344 (source: NCBI BLink).
Link: InterPro Scan - TAIR