ET7451

CSHL Arabidopsis genetrap mutant lines

Original: ET7451

Phenotypes

Morphological phenotypes

Original description

  • sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET7451

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17414444 [Map]; Strand: w
      • AT4G36930.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET7451 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCC CTAATGATGA GAAACGAGAC 
    TTCTCGAGTT ATCTGCATGT GGGTCACCGC TCCCGTGCAC ACCAATCAAA 
    GACGCCGTCG TTGTAGTCGT CGCCGGGGAG TAGTAAGAAG GTAAAGGAGA 
    AGAACGGTCG AAAATATGCC GGAGAAACTG AGAGATTTCG TCGGAAGAAG 
    ACGGAGGATG ATGAAGATGA TGATTGATAC GAGTATCGTA AACCGAGGAA 
    GAAGAAGAAG ATGAAATCAA TTTCTTATCT CCCATCACTC TCTGCTTCTT 
    CTCTCCC

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17414508 [Map]; Strand: w
      • AT4G36930.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET7451 - 5-prime edge 
    CATCCTACTT TCATCTCTGT CCATCATCCA CCGTCAGATT CTGTGCTTAT 
    GTCGAAACGT GTCGGAGATT TCTCTGAGGT TTTAATCGGC GGAGGATCAG 
    GCTCAGCCGC CGCGTGTTTT GGTTTCTCCG GTGGTGGTAA TAATAACAAC 
    GTTCAAGGAA ATAGCTCTGG GACTCGAGTA TCGTCTTCTT CCGTTGGAGC 
    TAGTGGCAAC GAGACAGATG AGTATGACTG TGAAAGCGAG GTTTTTTCTC 
    AATCTCTGTT TTTTATCTTT TGCATGTTTT AAAAGTTGAA TCTTTGTCTC 
    TTTCCCGAGA AAATGTTTCT ACAGAGATTT CTCTTTAACG GATCTGTACT 
    TTATTTTCCC CCTTAAAATC CGCAATTTTT TTGGTTGTGA TTTTGAGTGA 
    AGTTTTGTCA TTTGTGAGTG TAATAATGAA TGCACACCGA GTGTTTGATA 
    ATTTGCTTCA ATGAAAATA

AT4G36930.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator Summary
Encodes a transcription factor of the bHLH protein family. Mutants have abnormal, unfused carpels and reduced seed dormancy.
Computational Description
SPATULA (SPT); CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT5G67110.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR