ET7486

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

embryo lethal

Anatomical entity /structure development stage	Phenotypes
seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997)

Original: ET7486

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 5; Position: 3466282 [Map]; Strand: c
- AT5G10960.1 - [+] show detail - Polynucleotidyl transferase, ribonuclease H-like superfamily protein
  Distance: 595; Region: intergenic
- AT5G10970.1 - [+] show detail - C2H2 and C2HC zinc fingers superfamily protein
  Distance: -2986; Region: intergenic

GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTAGTT GGAAGTATTA 
TGTCAAAATG TGGATTTGTG TATGAACTCA GTCTTCCATC AAGATAATTA 
AATCTAAGTT TCTCAAAACC TTAAATATTT CATCTCCTCN CGGACGANNN 
GATGATCGAA AACATATGAT CCAATAGCAA CACGACACGA GAAATAAAGT 
AAAAAGAAGA AAACAACAGC AATACGGCAA AAGTCCGAGT CACTATTATG 
TAGGTGTGGC AGAGAATCAA ATCTACTTCT TCTACTNCGA CAAACAGTGT 
ACTTGCTAGT CCTGTCTTTA ACGGCTTCTC TGAGTCTCTT CACGTGTGTT 
TGTGTGTTGG GAATTGGGAT TCTGATTTGG GCCTTTGTTG TGTGGGCTTT 
GATCA

5 prime edge [+] show sequence

Not mapped

TTTGGCCCAC AAAACCTTGG TTGGCTTAAA ATGGCTCCTC TTGGCCATTT 
GGAAAAAAAT TGGGTTTTGG ACCTGTTGGG GAATGCCACC ACCTTCCTTT 
GGGGATTTCC CCCCCCTTAA CCCTGGCCCG GTTCCCCTTT CCTTTTTAAC 
CCCCTAAAAA CCAATTTTTT CCTTAATTGG TTCCCCAGGG TTTTGTTTTT 
A

AT5G10960.1

Model type: Protein coding
Short Description: Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Computational Description: Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: ribonuclease activity, nucleic acid binding; INVOLVED IN: RNA modification; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT1G80780.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G10970.1

Model type: Protein coding
Short Description: C2H2 and C2HC zinc fingers superfamily protein
Computational Description: C2H2 and C2HC zinc fingers superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: hypocotyl, root, leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger protein 3 (TAIR:AT5G25160.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR