ET7537

CSHL Arabidopsis genetrap mutant lines

Original: ET7537

Phenotypes

Morphological phenotypes

Original description

  • notched leaves with a wavy surface
Anatomical entity
/structure development stage		 Phenotypes
vascular leaf (PO:0009025)
  • notched (PATO:0001495)

Original: ET7537

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 23784592 [Map]; Strand: c
      • AT1G64070.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: 1143; Region: intergenic
      • AT1G64080.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 429; Region: intergenic
    Flanking Genome Sequence: ET7537 - 5-prime edge 
    GTGAAAAATC CAAATTTACT TTTTTCCCTT TATATTGTGA ATCTATCTCT 
    CTTTTCTTTT TGTTTGCGAA TGGAGTATGT AGTACAAAAA GATGGAAGAA 
    AACAAATCCA AAAATTTCAA GTTCCCGTAA CGTTAGTAAA ATTCAATAAT 
    GTACAGAAAC AAAACTTGGC TCCTCCAGAT CAATACAATA ATTCACAATA 
    ATATTGCACA CGGGTACAAA ATGCATTGTT ATTTTTCATT GAAGTGTCTT 
    ATTCAATGCT TGTAGACAAA AATAAATTAC TGTACGAAAA ATCAACAAAA 
    TTAAATTACG TACGTTATAA ATTGTAGTTC GAAGATTAGG GTAAACCACT 
    ATCTGTTAGT GTTGTAAATC AAAGAAACGT ATAGAGAGAA GAAATGTATA 
    TTATTAATTA GACCATATGT GAAGTATTTG AATTTTCTGT GCCAGGTTGA 
    TCGAAAAGGC CCAAGTTCAA TTATAACTCT TTTAATTGGC CCACCACCGG 
    TTTTAATATT GTCAAAGCTT CTTTTGTTCT CTCTACAGAG AAAACAAATA 
    CCCAATAGTA TATCAACCGA ACCGAGTTTT TTGAACACTA AACCAAATCA 
    TATCGGTACC AAAGTTCATT TAAAACCATT TGATAATCAT GTACATACAC 
    CTA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 85114 [Map]; Strand: c
      • AT2G01110.1 - [+] show detail - Sec-independent periplasmic protein translocase
        Distance: 0; Region: exon1 (5UTR)
      • AT2G01120.1 - [+] show detail - origin recognition complex subunit 4
        Distance: -287; Region: promoter
      • AT2G01120.2 - [+] show detail - origin recognition complex subunit 4
        Distance: -302; Region: promoter
    Flanking Genome Sequence: ET7537 - 5-prime edge 
    TACTTTATCC CTGACCGGAA CAATCGTTCC TTCTCTGAAG CTCTCTTTGC 
    AATTGAAAAT CAACAACATA CGATACGAGA GAGGATTCTT CGAGAGATGA 
    GCAGCACAAG CACTAGTTCT GCTCTTATCC ACCATTTCCG CCTCACCACT 
    CGCAACTTGG GTTCGCCTAC AAAGCAGCGT TGTCCTTACG CTGTAACTTT 
    CTGCAATTCG TGGAGGGAAG CTGGACTCCG ATACTCCGTC ACGCAACGCC 
    GGAGCAAAGG CTTTGGGCCG GTGTCAGCTC TCAATGACGA CGATTCACCA 
    ACAGAGACCA CCCCCGGCGT TGGCTCTGCT GTAGAAGACA GACCACCAGG 
    TATTTATTAT TAGGAGAAAC TCCACTTTCT TGATTGATTT TTATTATCAT 
    CTCCACACTG CTTTGGGTTG TTGATATAGT TAGTTAGTTA GTTAGTGATG 
    AATTACACAC TGCTGCTGTG GCAGATTCAT CTGAAGATAG ATCAAGTTCG 
    GTCTATGAGT TTCTGTATCC CCGTAAAGAG GAGCTCCCCT GATGACAAAG 
    AATGACTATT TTCGACCATC TCGAGGAGCT CCCGGGAGAG AATATTCGTC 
    TCTGTTTTGG CTGTAGGAGC TGCAATCTTG GGATGCT

AT1G64070.1

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS-LRR class) family
Curator Summary
Encodes a TIR-NBS-LRR class of disease resistance protein effective against Leptosphaeria maculans.
Computational Description
RESISTANCE TO LEPTOSPHAERIA MACULANS 1 (RLM1); FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: defense response to fungus, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: stem, sepal, flower, carpel, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT2G16870.1); Has 18146 Blast hits to 14776 proteins in 597 species: Archae - 15; Bacteria - 1058; Metazoa - 1168; Fungi - 58; Plants - 15498; Viruses - 0; Other Eukaryotes - 349 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G64080.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52870.1); Has 1546 Blast hits to 738 proteins in 176 species: Archae - 0; Bacteria - 143; Metazoa - 278; Fungi - 131; Plants - 95; Viruses - 4; Other Eukaryotes - 895 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01110.1

Model type
Protein coding
Short Description
Sec-independent periplasmic protein translocase
Curator Summary
mutant is Albino and pale green; Chloroplast Protein Translocation (tatC). Core subunit of the chloroplast Tat translocase. Integral chloroplast thylakoid membrane protein.
Computational Description
ALBINO AND PALE GREEN 2 (APG2); FUNCTIONS IN: proton motive force dependent protein transmembrane transporter activity; INVOLVED IN: thylakoid membrane organization, double fertilization forming a zygote and endosperm; LOCATED IN: chloroplast thylakoid membrane, receptor complex, chloroplast, integral to thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec-independent periplasmic protein translocase (InterPro:IPR002033), Sec-independent periplasmic protein translocase, conserved site (InterPro:IPR019820), Twin arginine-targeting protein translocase, TatC (InterPro:IPR019822); Has 5953 Blast hits to 5918 proteins in 1859 species: Archae - 177; Bacteria - 3492; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 2203 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01120.1

Model type
Protein coding
Short Description
origin recognition complex subunit 4
Curator Summary
Origin Recognition Complex subunit 4. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with all ORC subunits except ORC1b.
Computational Description
origin recognition complex subunit 4 (ORC4); CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Origin recognition complex, subunit 4 (InterPro:IPR016527); Has 675 Blast hits to 668 proteins in 199 species: Archae - 9; Bacteria - 0; Metazoa - 335; Fungi - 166; Plants - 90; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01120.2

Model type
Protein coding
Short Description
origin recognition complex subunit 4
Curator Summary
Origin Recognition Complex subunit 4. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with all ORC subunits except ORC1b.
Computational Description
origin recognition complex subunit 4 (ORC4); CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Origin recognition complex, subunit 4 (InterPro:IPR016527).
Link
InterPro Scan - TAIR