ET7590

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

semi-sterile

Anatomical entity /structure development stage	Phenotypes
seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997)

Original: ET7590

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence

Chromosome: 5; Position: 607295 [Map]; Strand: c
- AT5G02680.1 - [+] show detail - LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED...
  Distance: 0; Region: intron6 (CDS)
- AT5G02690.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
  Distance: 0; Region: exon1 (5UTR)

CCTACTTTCT CCCTGGCTAT CTGAGTTTCT GTGCCTGCTT TTTTAGGTTC 
ATAGTAATGT TATATGTTGG GGTCTTAAAG GGTTTATCGA TTCTCTTTTC 
ATCGTTGTGT CACATGTATG ATTCATCTGG GTCTCTACTT CAAGCAAAGC 
AAAGACGACG ATTCTTCCGG ATCCTTTAAA ACCAAAGAAC TATGGTAAGA 
GATTTTCCTA CTGAAATTGC TTTTAGAAGA ACTGCTGCTG GTTTAGTACA 
CCTCTTGTGA GGTCGGTTTG ATTGTTTATT TCGAAAATTT TGTTTCTATT 
TATTTCTAGA ATGCCAAGTG TGATTAAAGC TGTCTATTGC ATTTTGTAGG 
TATTTAAGCA GCAAGTAAAC CATGGTAGAT AACTATGGCA AGACTTGATA 
TTCTATTCGG TAAAATTGTG AAGGCTGAGA AACATCCTAA GGCAAATGCA 
TTGTATGTAG AAGAAATTGA TATTGGGGGT GGTGAAATTA ATTACCGCTT 
GAGGAAATGC AGGTTTGTCC AATCAGTCTA GTCATGTGTT TTCTTCCCAA 
TATCATTATC AGTAT

5 prime edge [+] show sequence
1. Chromosome: 1; Position: 3095927 [Map]; Strand: w
  - AT1G09570.1 - [+] show detail - phytochrome A
    Distance: 0; Region: exon4 (CDS)
  - AT1G09570.2 - [+] show detail - phytochrome A
    Distance: 0; Region: exon5 (CDS)
Flanking Genome Sequence: ET7590 - 5-prime edge
```
ACCTCCGGGT GGTGTAAAGT TTACAGCCAT CAGCATGAAA TCTGCCAAAC 
TTGTTGAAGC CTAATACTGT CTCCATACAA AGTGTCAGAC ATTACTTCTT 
CTCCGGTCTC ATTTGTTATC CGAACACTCT TTCCGTTACT CTTCATCTC
```

AT1G09570.1

Model type: Protein coding
Short Description: phytochrome A
Curator Summary: Light-labile cytoplasmic red/far-red light photoreceptor involved in the regulation of photomorphogenesis. It exists in two inter-convertible forms: Pr and Pfr (active) and functions as a dimer.The N terminus carries a single tetrapyrrole chromophore, and the C terminus is involved in dimerization. It is the sole photoreceptor mediating the FR high irradiance response (HIR). Major regulator in red-light induction of phototropic enhancement. Involved in the regulation of de-etiolation. Involved in gravitropism and phototropism. Requires FHY1 for nuclear accumulation.
Computational Description: phytochrome A (PHYA); CONTAINS InterPro DOMAIN/s: Phytochrome, central region (InterPro:IPR013515), Signal transduction histidine kinase, core (InterPro:IPR005467), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), Phytochrome chromophore attachment domain (InterPro:IPR016132), ATPase-like, ATP-binding domain (InterPro:IPR003594), PAS fold-2 (InterPro:IPR013654), Phytochrome A/B/C/D/E (InterPro:IPR012129), Phytochrome (InterPro:IPR001294), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), Phytochrome chromophore binding site (InterPro:IPR013516), GAF (InterPro:IPR003018); BEST Arabidopsis thaliana protein match is: phytochrome C (TAIR:AT5G35840.1); Has 30353 Blast hits to 29854 proteins in 3804 species: Archae - 337; Bacteria - 24139; Metazoa - 4; Fungi - 596; Plants - 4116; Viruses - 7; Other Eukaryotes - 1154 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G09570.2

Model type: Protein coding
Short Description: phytochrome A
Curator Summary: Light-labile cytoplasmic red/far-red light photoreceptor involved in the regulation of photomorphogenesis. It exists in two inter-convertible forms: Pr and Pfr (active) and functions as a dimer.The N terminus carries a single tetrapyrrole chromophore, and the C terminus is involved in dimerization. It is the sole photoreceptor mediating the FR high irradiance response (HIR). Major regulator in red-light induction of phototropic enhancement. Involved in the regulation of de-etiolation. Involved in gravitropism and phototropism. Requires FHY1 for nuclear accumulation.
Computational Description: phytochrome A (PHYA); CONTAINS InterPro DOMAIN/s: PAC motif (InterPro:IPR001610), Phytochrome, central region (InterPro:IPR013515), Signal transduction histidine kinase, core (InterPro:IPR005467), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), Phytochrome chromophore attachment domain (InterPro:IPR016132), ATPase-like, ATP-binding domain (InterPro:IPR003594), PAS fold-2 (InterPro:IPR013654), Phytochrome (InterPro:IPR001294), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), Phytochrome chromophore binding site (InterPro:IPR013516), GAF (InterPro:IPR003018); BEST Arabidopsis thaliana protein match is: phytochrome B (TAIR:AT2G18790.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G02680.1

Model type: Protein coding
Computational Description: LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (TAIR:AT4G13780.1); Has 252 Blast hits to 252 proteins in 89 species: Archae - 0; Bacteria - 71; Metazoa - 93; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G02690.1

Model type: Protein coding
Computational Description: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 9 growth stages; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR