ET7617

CSHL Arabidopsis genetrap mutant lines

Original: ET7617

Phenotypes

Morphological phenotypes

Original description

  • wide leaves, some asymetrical leaves
Anatomical entity
/structure development stage		 Phenotypes
vascular leaf (PO:0009025)
  • increased width (PATO:0000600)
  • abnormal (PATO:0000460)

Original: ET7617

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 6016954 [Map]; Strand: c
      • AT1G17495.1 - [+] show detail - transposable element gene
        Distance: -3212; Region: intergenic
      • AT1G17500.1 - [+] show detail - ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase famil...
        Distance: -1803; Region: intergenic
    Flanking Genome Sequence: ET7617 - 3-prime edge 
    TTTACCGACC GTTACCGCCC GTTTTCATCC CCGTTACCGA CAGTTTGACA 
    TATGAAAATA CTAAATAAAA TCCATTAGCT ATAATTTATA AAAGTATACA 
    AATTACAGCA CAAAAAAAGA CGTTTGGATG AGGATTACTG ACTGATATAT 
    ATTGAGCAAT GCTTGATTTG GCAATTGTTG CAGTCTTTTT ACTGTTTTCT 
    TCATTCAATT TGTCCATACA TTTGCCGCTT GGATATCACA CCATGCAATG 
    TCTTGTCTCC ATCTACCATC ATACTTTCAT C

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 420649 [Map]; Strand: w
      • AT1G02205.3 - [+] show detail - Fatty acid hydroxylase superfamily
        Distance: 0; Region: exon5 (CDS)
      • AT1G02205.1 - [+] show detail - Fatty acid hydroxylase superfamily
        Distance: 0; Region: exon4 (CDS)
      • AT1G02205.2 - [+] show detail - Fatty acid hydroxylase superfamily
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: ET7617 - 5-prime edge 
    TACATCTACG GCACAATGGA TGAAAGCACG GATACGTTGT ACGAGAAAAC 
    TCTAGAAAGA GGAGATGATA TAGTGGACGT GGTGCACTTA ACTCACCTGA 
    CGACGCCAGA ATCCATATAC CATTTGCGCA TTGGCTTGGC CTCATTTGCC 
    TCCTACCCCT TCGCTTATAG ATGGTTCATG CGCCTTTTGT GGCCTTTCAC 
    CTCTCTCTCC ATGATATTCA CGCTCTTCTA CGCCCGCCTC TTTGTCGCTG 
    AGAGAAACTC CTTCAACAAG CTCAACTTGC AGTCTTGGGT GATACCTAGA 
    TATAATCTAC AGGTCCTCAT CATCATCATC ATCATCATCA TATATATAGG 
    CTGGTTAACT TGCTGATGCA TATATATTAA TGGTGATATA TATATGATGC 
    ATGCAGTACT TGTTAAAATG GAGGAAAGAA GCGATCAATA ACATGATTGA 
    GAAAGCGATA CTGGAGGCAG ATAAGAAAGG AGTGAAGGTG CTTAGTCTGG 
    GTCTCATGAA CCAAGTAAAG AAACTATCTC TGACTGTTTT GGTTTTATAT 
    TGGGTAGATG CCGTACGTAC TACGTAGTGT ATGTTAAAGC TTTAATTTGA 
    TGAACTGAAA C

AT1G02205.1

Model type
Protein coding
Short Description
Fatty acid hydroxylase superfamily
Curator Summary
Expression of the CER1 gene associated with production of stem epicuticular wax and pollen fertility. Biochemical studies showed that cer1 mutants are blocked in the conversion of stem wax C30 aldehydes to C29 alkanes, and they also lack the secondary alcohols and ketones. These suggested the CER1 protein is an aldehyde decarbonylase, but the exact molecular function of this protein remains to be determined.
Computational Description
ECERIFERUM 1 (CER1); FUNCTIONS IN: aldehyde decarbonylase activity; INVOLVED IN: aldehyde catabolic process, wax biosynthetic process, cuticle development; LOCATED IN: endomembrane system, endoplasmic reticulum; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694), Uncharacterised protein, Wax2 C-terminal (InterPro:IPR021940); BEST Arabidopsis thaliana protein match is: Fatty acid hydroxylase superfamily (TAIR:AT1G02190.1); Has 341 Blast hits to 339 proteins in 49 species: Archae - 0; Bacteria - 44; Metazoa - 0; Fungi - 0; Plants - 284; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G02205.2

Model type
Protein coding
Short Description
Fatty acid hydroxylase superfamily
Curator Summary
Expression of the CER1 gene associated with production of stem epicuticular wax and pollen fertility. Biochemical studies showed that cer1 mutants are blocked in the conversion of stem wax C30 aldehydes to C29 alkanes, and they also lack the secondary alcohols and ketones. These suggested the CER1 protein is an aldehyde decarbonylase, but the exact molecular function of this protein remains to be determined.
Computational Description
ECERIFERUM 1 (CER1); FUNCTIONS IN: aldehyde decarbonylase activity; INVOLVED IN: aldehyde catabolic process, wax biosynthetic process, cuticle development; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694), Uncharacterised protein, Wax2 C-terminal (InterPro:IPR021940); BEST Arabidopsis thaliana protein match is: Fatty acid hydroxylase superfamily (TAIR:AT1G02190.1); Has 2658 Blast hits to 2653 proteins in 533 species: Archae - 0; Bacteria - 823; Metazoa - 248; Fungi - 388; Plants - 579; Viruses - 3; Other Eukaryotes - 617 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G02205.3

Model type
Protein coding
Short Description
Fatty acid hydroxylase superfamily
Curator Summary
Expression of the CER1 gene associated with production of stem epicuticular wax and pollen fertility. Biochemical studies showed that cer1 mutants are blocked in the conversion of stem wax C30 aldehydes to C29 alkanes, and they also lack the secondary alcohols and ketones. These suggested the CER1 protein is an aldehyde decarbonylase, but the exact molecular function of this protein remains to be determined.
Computational Description
ECERIFERUM 1 (CER1); FUNCTIONS IN: aldehyde decarbonylase activity; INVOLVED IN: aldehyde catabolic process, wax biosynthetic process, cuticle development; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694), Uncharacterised protein, Wax2 C-terminal (InterPro:IPR021940); BEST Arabidopsis thaliana protein match is: Fatty acid hydroxylase superfamily (TAIR:AT1G02190.1).
Link
InterPro Scan - TAIR

AT1G17495.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 4.7e-213 P-value blast match to gb|AAO73521.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)
Link
InterPro Scan - TAIR

AT1G17500.1

Model type
Protein coding
Short Description
ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein
Computational Description
ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism; INVOLVED IN: metabolic process, ATP biosynthetic process, phospholipid transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, phospholipid-translocating, flippase (InterPro:IPR006539), ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (TAIR:AT1G72700.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR