ET7621

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

dwarf mutant

Anatomical entity /structure development stage	Phenotypes
whole plant (PO:0000003)	decreased height (PATO:0000569)

Original: ET7621

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 3; Position: 2390340 [Map]; Strand: w
- AT3G07490.1 - [+] show detail - ARF-GAP domain 11
  Distance: -849; Region: promoter

TATTTTACCG ACCGTTACCG CACCGTTTTC ATCCCTAGCC TAAGCTGTGT 
TTAGAAACTA CTGGTAGGAA AATAATATCT AAACAGTATA CTCAATATGT 
TTTGTTACTG AATCAAACCC TGAACAAGAA TCGATCCTAC AAACAGAGTT 
TCTGTTTACA AGGCTCAAAT CAAATCTACT AAACCATTGG TATAAGATGC 
CAGATCCATT CTACCTTATT CCCTTTCCCT AAAAGCAGAA ACTGTGATTA 
CAATGCTCAG AGTATATTTA ATGTTATCTC AGCCTCACCA AAGATGCAGT 
GGTTATGAGA ATGAAAGATC AAAACTCCAC TAATTCTTC

3 prime edge [+] show sequence

Chromosome: 3; Position: 2390229 [Map]; Strand: w
- AT3G07490.1 - [+] show detail - ARF-GAP domain 11
  Distance: -960; Region: promoter

ATCAAACCCT GAACAAGAAT CGATCCTACA AACAGAGTTT CTGGTTACGA 
GGGTCAAATC AAATCTACTA AACCATTGGT ATAAGATGGC AGATCCATTC 
TACCTTATTC CCTTTCCCTA AAAGCAGAAA CTGGGATTAC AATGCTCAGA 
GTATATTTAA TGGTATCTCA GCCTCACCAA AGATGCAGTG GGTATGAGAA 
TGAAAGATCA AAACTCCACT AAT

5 prime edge [+] show sequence

Chromosome: 3; Position: 2390420 [Map]; Strand: w
- AT3G07490.1 - [+] show detail - ARF-GAP domain 11
  Distance: -769; Region: promoter

GCTTAGCATC TTTAAAGTTG CGAATAGTTT TCTAATTCTT ACTCGTTTTT 
CAAAATCCGA AACCAAAGCA AACTGAAAAA TGGATGCTCA TCTCTATCTA 
CCTGAAAACG TTGATATCAA AATCAATTTC TGCTTGTGGT GCACTTAACA 
CAATAATCAT TACTCTCAGT CTTATAGCAA TACAACATAA TTTAAACCTG 
TTAACAGACT ATCAATCTGT TAAGAAGTGA TTAAGACCTT GACTATTTTA 
AAGGCTATCT CTTTTATTTT AATTTTATTA TTGTTCAAGT TGTCTCTTCT 
ATTTTCGAAA CATCGCCATG TTCAAATCGA CAAAAAAAGA AGTGTATAGA 
ACAAATCCAC TTAGAATAAG TTACATCTTA TGTAGATAAA ATAAATAAAT 
AAGTTTTGTA GAAAATTAAC CAAACATATA CAAACAGACG ATAAGCATTT 
GAATTGAATT ATATTTGTCT ATACCATAAA TTGAGTCTC

5 prime edge [+] show sequence

Chromosome: 3; Position: 2390575 [Map]; Strand: w
- AT3G07490.1 - [+] show detail - ARF-GAP domain 11
  Distance: -614; Region: promoter

AATCATTACT CTCAGTCTTA TAGCAATACA ACATAACGTA AACCTGTTAA 
CAGACTATCA ATCTGTTAAG AAGTGATTAA GACCTTGACT ATTTTAAAGG 
GTATCTCTTT TATTTTAATT TTATTATTGG TCAAGTTGGC TCTTCTATTT 
TCGAAACATC GCCATGTTCA AATCGACAAA AAAA

AT3G07490.1

Model type: Protein coding
Short Description: ARF-GAP domain 11
Curator Summary: A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.
Computational Description: ARF-GAP domain 11 (AGD11); FUNCTIONS IN: calcium ion binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Parvalbumin (InterPro:IPR008080), EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT2G43290.1); Has 25143 Blast hits to 16842 proteins in 1503 species: Archae - 3; Bacteria - 170; Metazoa - 10890; Fungi - 4135; Plants - 6085; Viruses - 0; Other Eukaryotes - 3860 (source: NCBI BLink).
Link: InterPro Scan - TAIR