ET7654

CSHL Arabidopsis genetrap mutant lines

Original: ET7654

Phenotypes

Morphological phenotypes

Original description

  • dwarf mutant
Anatomical entity
/structure development stage		 Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)

Original: ET7654

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18034622 [Map]; Strand: w
      • AT4G38570.2 - [+] show detail - probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2
        Distance: -881; Region: promoter
      • AT4G38580.1 - [+] show detail - farnesylated protein 6
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET7654 - 3-prime edge 
    TTTACCGACC GTTACCCACC GTTTTCATCC CTACATGAGA GCAGTCAAAC 
    ATTTCAGAGA CATGATCAAG AACACCCATT TCTTCTTCTT TTTATTCCAG 
    AAAAGGAAAA ACCTGAAGAA CCCAGGAGAG TTAAGAACTT TCTTTATGAG 
    GAGGAGGAGA GAGTAGTATA GCAAAGAGTG AAATCTGTAA AAAAGAGGGG 
    CAAAAGGGAA AGTGGAGGTG TAAAGAAGTA AATGATGAAT TGGGAGAATA 
    TATATAGGCA TTATTGGAAT AAGTAATACA GTATGTATCT AATTAAGTAA 
    ATGATGGATG GGTCACCTTT CTTCTCTGGT CCCAGCAGTT TCCTAGTCGC 
    CGTCTCGATT C

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18034724 [Map]; Strand: w
      • AT4G38570.2 - [+] show detail - probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2
        Distance: -983; Region: promoter
      • AT4G38580.1 - [+] show detail - farnesylated protein 6
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: ET7654 - 5-prime edge 
    AAAAAGCGCA AACAGTTGCA GGTACCTTCC CTCTTCCTTT TCTTATCTTA 
    GCAGATTCAG CTGATAACTT AGATCTTGGT TTGCAAAAAA ACAAACATTA 
    TAATTCGTTG AAAAGTTATG ATGAATGAGT CTAGTAGAAA CTAGCTTCGA 
    TGGTTACTAG GAAAGTTTGA GTGTTACTTA GTAGATCTCG TATATTATAG 
    TTCCATAAAT AGACATCATT AGCAAGTTTA TAATTGTGGT TTTGGCTGGC 
    TAATTTGTGT TACCTTTCTT ACTTCAGATC TTTTTTAATA GTATCTCTGT 
    TTCTTTTATC TGAAGAAGTA TATCCAAATT GTTACATGAT ATAAGTGGGA 
    TTTTATTTGA AGCAGTTTTT GTTTTGAGTT AATGTTCCTT CCTAACGCCG 
    ACCGAATAGA TTCTTTTAAT CTGAAATATA AGTTGATACA GCCATCTGTT 
    AGATTTTACA CCGGGATTTG TATT

AT4G38570.2

Model type
Protein coding
Short Description
probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2
Computational Description
probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 (PIS2); FUNCTIONS IN: phosphotransferase activity, for other substituted phosphate groups; INVOLVED IN: phosphatidylinositol biosynthetic process; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CDP-alcohol phosphatidyltransferase (InterPro:IPR000462), CDP-diacylglycerol-inositol 3-phosphatidyltransferase, eukaryote (InterPro:IPR014387); BEST Arabidopsis thaliana protein match is: phosphatidylinositol synthase 1 (TAIR:AT1G68000.1).
Link
InterPro Scan - TAIR

AT4G38580.1

Model type
Protein coding
Short Description
farnesylated protein 6
Curator Summary
putative farnesylated protein (At4g38580) mRNA, complete
Computational Description
farnesylated protein 6 (FP6); FUNCTIONS IN: metal ion binding; INVOLVED IN: heat acclimation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT4G35060.1); Has 1169 Blast hits to 1088 proteins in 38 species: Archae - 2; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR