ET7773

CSHL Arabidopsis genetrap mutant lines

Original: ET7773

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET7773

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1128449 [Map]; Strand: w
      • AT5G04130.1 - [+] show detail - DNA GYRASE B2
        Distance: -358; Region: promoter
      • AT5G04130.2 - [+] show detail - DNA GYRASE B2
        Distance: -358; Region: promoter
    Flanking Genome Sequence: ET7773 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAACTAAG GCGTTATGGA 
    ACTTTAACCT ATAAACTCTT CGGATACGGA AACCAACACA TGTAAAATTA 
    GTCTTCTCCT TCACTTTTAA ATTTTGTACT GTACTTCCAA GTTCTTTTAA 
    TCAAACCATG GAAACAAAAC ATAAAATTCC ACCAAAATTA TCTATTGGGC 
    TATGAAAAAT ATAATATTTG GGCTTTTAAC TAATAAGCCC ATATTTTAAG 
    CCAGCCCTAC TGTTGGGCTT TGGAAACGGC GGCAAAATTA TTGTTTTCGT 
    ATTTTATTTT TTTTACTTGT ATTAAATAAA AAATTTAATC ATTTAAAATT 
    TTCAAAATAC ATTGGGGGTT TAGGGTTTTA TCTTTTACAC AGTGAAGGTG 
    AAAAAAAAAT AGCAAAGGAG GAAAAAAACA AAATTTGAAG AAGAAGAAAA 
    ACCTCTGAGC TTCCAA

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1128539 [Map]; Strand: w
      • AT5G04130.1 - [+] show detail - DNA GYRASE B2
        Distance: -448; Region: promoter
      • AT5G04130.2 - [+] show detail - DNA GYRASE B2
        Distance: -448; Region: promoter
    Flanking Genome Sequence: ET7773 - 5-prime edge 
    TACCTTTAAA TAAATGTTTA CAAAAGCGTT ATAAACCCCA TTATACAGAA 
    ACCAAATCGA TGCATGCATG TTTATCTTTA TTTATGTTTC AAACCGTCAC 
    TAATAATAAT ATATGTGAGT TGTGAACTCG TAAAATTACC ACATTGCAAT 
    CATAATACCA AACATTCAAA GAAACCAATC TATCTTTCTT TTATATAATC 
    AATCAATATA CAGTTATTAA ATGGCAAGTG TACATTTGTA CTCAAAAGAA 
    GAGATTGGTG GATCCAAAAC AATAACAAAG ATTTTTATCA GACTATATTT 
    CAACAAGTGT CGTCTCATTT CTAATTTCTG TTCGCTTTGG TGCTTGTGTT 
    TGCTCTTTTT TGGGTGGTCG TCTCGTGATA CGCCAACTGA CGATAAGCTG 
    TAGCTCTTAT CTTATCATCA TAATTCCATA AGTGACAGAG AGTAGGCAAC 
    GAGAATATGA TAGAGAGAAG GTGGCTTTTA GAGCAACTTT AAGGACATTT 
    CATATCCTTA AGGCTTCTCT AGTCTATTTC AGCCACACAC ACACCCCTCA 
    ACCCCATACC CGTACGTGTC TTTTCGTAAA TTCACATATT TTTGTTTAGT 
    TATACGTGTG TGTATAAATA TCTCTCATTA ATATTAAATA CCAAAATCTC 
    AACTATCT

AT5G04130.1

Model type
Protein coding
Short Description
DNA GYRASE B2
Computational Description
DNA GYRASE B2 (GYRB2); FUNCTIONS IN: DNA topoisomerase activity, DNA topoisomerase (ATP-hydrolyzing) activity, DNA binding, ATP binding; INVOLVED IN: DNA topological change, DNA metabolic process; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: DNA topoisomerase, type IIA, conserved site (InterPro:IPR018522), DNA topoisomerase, type IIA, subunit B (InterPro:IPR000565), DNA topoisomerase, type IIA, subunit B, domain 2 (InterPro:IPR013506), ATPase-like, ATP-binding domain (InterPro:IPR003594), DNA topoisomerase, type IIA, subunit B, C-terminal (InterPro:IPR002288), DNA topoisomerase, type IIA, subunit B/N-terminal, alpha-beta (InterPro:IPR013759), DNA topoisomerase, type IIA, subunit B/N-terminal (InterPro:IPR001241), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Toprim domain (InterPro:IPR006171), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), DNA topoisomerase, type IIA, central (InterPro:IPR013760); BEST Arabidopsis thaliana protein match is: DNA GYRASE B1 (TAIR:AT3G10270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G04130.2

Model type
Protein coding
Short Description
DNA GYRASE B2
Computational Description
DNA GYRASE B2; FUNCTIONS IN: DNA topoisomerase activity, DNA topoisomerase (ATP-hydrolyzing) activity, DNA binding, ATP binding; INVOLVED IN: DNA topological change, DNA metabolic process; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), DNA topoisomerase, type IIA, subunit B, domain 2 (InterPro:IPR013506), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), ATPase-like, ATP-binding domain (InterPro:IPR003594), DNA topoisomerase, type IIA, subunit B (InterPro:IPR000565), DNA topoisomerase, type IIA, subunit B/N-terminal (InterPro:IPR001241); BEST Arabidopsis thaliana protein match is: DNA GYRASE B1 (TAIR:AT3G10270.1); Has 25944 Blast hits to 25881 proteins in 6578 species: Archae - 105; Bacteria - 19082; Metazoa - 171; Fungi - 228; Plants - 112; Viruses - 77; Other Eukaryotes - 6169 (source: NCBI BLink).
Link
InterPro Scan - TAIR