ET7856

CSHL Arabidopsis genetrap mutant lines

Original: ET7856

Phenotypes

Morphological phenotypes

Original description

  • sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET7856

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25306188 [Map]; Strand: c
      • AT5G63087.1 - [+] show detail - Plant thionin family protein
        Distance: 990; Region: intergenic
      • AT5G63090.1 - [+] show detail - Lateral organ boundaries (LOB) domain family protein
        Distance: 2384; Region: intergenic
    Flanking Genome Sequence: ET7856 - 3-prime edge 
    TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTATATG AATCCTCCTT 
    TCATAACTCT TTTAAGCATT CAAGACATTA TTATATCCAG AAATAAATGA 
    TCATTGTGAG AAAACTGTTA TATGGAACTA AAAAAGAAAC ATAATCCAAT 
    GCCAAATCTC AACCCACTAT TATTAGAATC TATCGAGACA ATGGTCGGCG 
    GTTATTAGGC TATTAGTTTA TTCAATCATT ATTGAATCCT AATATTCTTA 
    CAAATCAATG ATTGGAAGAC TAAAGAACAT ATATTAAATC CTTTTATCAA 
    AAAAAAAAGA AAAAAGGTTC CCTTTTCCCA AAGGCCCCAC CATTTTTTTA 
    AAATTCCAAC CTTTAAATTT GGGGGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25306216 [Map]; Strand: c
      • AT5G63087.1 - [+] show detail - Plant thionin family protein
        Distance: 1018; Region: intergenic
      • AT5G63090.1 - [+] show detail - Lateral organ boundaries (LOB) domain family protein
        Distance: 2356; Region: intergenic
    Flanking Genome Sequence: ET7856 - 3-prime edge 
    ATCCCTATAT GAATCCTTTC TTTCATAACT CTTTTAAGCA TTCACCACAT 
    TATTATATCC AGAAATAAAT GATCATTGTG AGAAAACTGT TATATGGAAC 
    TAAAAAAGAA ACATAATCCA ATGCCAAATC TCAACCCACT ATTATTAGAA 
    TCTATCGAGA CAATGGTCGG CGGTTATTAG GCTATTAGTT TATTCAATCA 
    TTATTGAATC CTAATATTCT TACAAATCAA TGATTGGAAG ACTAAAGAAC 
    ATATATTAAA TCCTTTTATC AAAAAAAAAA AAAAAAAGGT TCCCTTTTCC 
    AAATGGCCCC ACCATTTTTT TAAAAATCCA ACTTTTAAAT TTGGGG

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25306104 [Map]; Strand: c
      • AT5G63087.1 - [+] show detail - Plant thionin family protein
        Distance: 906; Region: intergenic
      • AT5G63090.1 - [+] show detail - Lateral organ boundaries (LOB) domain family protein
        Distance: 2468; Region: intergenic
    Flanking Genome Sequence: ET7856 - 5-prime edge 
    CATACCAAAC AAAATCAGTA TCAAAAACTG CTAACTAAAA CTAACAGGGT 
    TACTTTAACA AAACAAAAAA ACTAGACATA TGTTCTTAAT TAATTAGTCA 
    TGTAGAGCAA CTACTTCCTT ATTCATTATT GGTATATTAA AAAAACATTG 
    CTCCACTAGT CCACTAATGT ATTGTTGTTG TTTTTGCTAT TTATATGCAT 
    GCCTTTGAAT TGAAATCATG GCAGCAATTA TTGGGAACTC TTTTGTCAAT 
    CATAAGCACT ATTCAGGATT CATAAGATCT GAATTCCCAA CTATTCCATT 
    TCCAGCCATC GTGTCATACC GAATAATTAT ACTACAATGG AAAATATAAT 
    AATAATCATG ATTCTTGAAG CCGCATGCAT TGAACAAAAC CTGAAAAATG 
    ATTGATTGTT AGATACATAC GAGAATCTCA TGATTTTGAA AGAGGTCCAC 
    TCAAATTTCT AAAAGAATAT ATGAAGTGAG TTTCCATAAT AATTTAAAAT 
    TAGTTAGCAG TT

AT5G63087.1

Model type
Protein coding
Short Description
Plant thionin family protein
Curator Summary
Encodes a Plant thionin family protein
Computational Description
Plant thionin family protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Plant thionin family protein (TAIR:AT5G63063.1); Has 8 Blast hits to 8 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G63090.1

Model type
Protein coding
Short Description
Lateral organ boundaries (LOB) domain family protein
Curator Summary
Involved in lateral organ development
Computational Description
LATERAL ORGAN BOUNDARIES (LOB); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 25 (TAIR:AT3G27650.1); Has 986 Blast hits to 981 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 986; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR