ET8008

CSHL Arabidopsis genetrap mutant lines

Original: ET8008

Phenotypes

Morphological phenotypes

Original description

  • dwarf mutant
Anatomical entity
/structure development stage
Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)

Original: ET8008

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 935576 [Map]; Strand: w
      • AT4G02110.1 - [+] show detail - transcription coactivators
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: ET8008 - 3-prime edge
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTACCCATGA 
    CCCGGTGACA ACTACCTTCC CGCTGTTTCG AGCAGCAACG CAAATCGGAT
    CATCCTATGT TTGTTGAAGA AAACAAAAAG TAAGATTTTT TCAACGAGAG
    ACGAAATCAG ATAATAAGAG AGAGAGAGAC GTACATAGAG AAGCTTATCT
    ACGATGAGGT GAGTACATGA CTGAGTGAAT TGGCCAACAT CAACACCACC
    ACCACTCACT AGCTTCGACC GTAACTGTTA TTGCAAAATC AGAAACCGTT
    ACGGAAATCT GAATCTACGA TTGAAAATAG AGAGCGAGAG AGAGATGACA
    TACCGAGTTT CCATGGATGG GATTGAATCC AACGAGAGCG AATTTGACAC
    CCGAATACGT CTTGGGAGGC AAACCCGAAT CCGATTGCAT TTTTTTAGGG
    TTTTATTAGG GTGGAGGAAT CGAAGATCGA TACTTGGATT TGAAATCAAA
    AGAAAAACCC AGATTTTAAC TGTAATTGAC TTTGAATCAG AAGAAGAAGA
    AGACGAACCA ATTAATAAAA TTGGGATTTA GAGAGCGTCT CGGGGAAGAT
    TTGAAGGGAG CGGGGGGAAA TTGAAAAAAT GAAAACTTTT GATTTTCCAA
    TTTTT
  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 935640 [Map]; Strand: w
      • AT4G02110.1 - [+] show detail - transcription coactivators
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: ET8008 - 5-prime edge
    CCTACTTTCT CCCTGCGTTG ATCACAGCTT CGACATTGGA ATGCTTGACA 
    ATGCAAATTC GGTTAGTCAT AACCAATATT TTAAAATGGT TTTATATGTA
    ATGTTTTGTT GATTGCTTAA TTTTGGTATT CACAGATATT GTATAGGCCT
    CTTAGAGATT TGAATGGGAT TCCAGGGTCC AAAGCCTTAG TTGTGTGCTT
    GACTGGCTAC CAAGGTCATG ATAGAGAAGA TATTATGGTT GGTGTGTTTT
    TTGTTTTTTG TCTTCATCCT CACTCGACC

AT4G02110.1

Model type
Protein coding
Short Description
transcription coactivators
Computational Description
transcription coactivators; FUNCTIONS IN: transcription coactivator activity; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein (TAIR:AT1G67180.1); Has 6090 Blast hits to 4661 proteins in 497 species: Archae - 12; Bacteria - 945; Metazoa - 2581; Fungi - 684; Plants - 424; Viruses - 13; Other Eukaryotes - 1431 (source: NCBI BLink).
Link
InterPro Scan - TAIR