ET8036

CSHL Arabidopsis genetrap mutant lines

Original: ET8036

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET8036

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8881516 [Map]; Strand: w
      • AT1G25330.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: ET8036 - 5-prime edge 
    TCTTGTAAGC ATTTCAGCCT TTCATTGATC TTCTCTCTTC GTACCTTTAT 
    GCATTCCACA AAGAATCCAA CACAACTAAG AAAAGTGATG TTTTTTGTAC 
    TTTTGAGTAT ATATGTATTT GTAGAATTAC CCTTTCAGCC AAACTATGGC 
    TATCAGTAGC TTGACCTCTC TTAGCTCGGA CATGAACAAC ATCTTTTGGC 
    TTCTGAGTCT CATCTTCATT CATGGCTTCT TCCTCTTCCG ACCTCTTTCT 
    TC

AT1G25330.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: BR enhanced expression 1 (TAIR:AT1G18400.1); Has 2000 Blast hits to 1994 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 42; Fungi - 45; Plants - 1913; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR