ET8076

CSHL Arabidopsis genetrap mutant lines

Original: ET8076

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET8076

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 23373120 [Map]; Strand: c
      • AT1G63040.1 - [+] show detail - pseudogene, DRE binding protein, similar to GI:3738224 from (Arabidopsis thal...
        Distance: 1047; Region: intergenic
      • AT1G63050.1 - [+] show detail - MBOAT (membrane bound O-acyl transferase) family protein
        Distance: 2764; Region: intergenic
    Flanking Genome Sequence: ET8076 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCC CACACACACT GATATACAGG 
    TGAGAGTGTC ATGATGTTAA AAAAGATCAA TACTTAAATT TGCATATAAT 
    GCTATATAAT GCTCAGGTCA TCGTATCTGA CGCTAAAGCA GTGTCATGAT 
    GTAAAAAATA ATCACTACTT AAAAATTTGA TTTTTAAGAC ATGTCTCAAC 
    ACTTGACTCT GATTTTGGCA TTGAATCATC GAAAAGTCCT TCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 23373190 [Map]; Strand: c
      • AT1G63040.1 - [+] show detail - pseudogene, DRE binding protein, similar to GI:3738224 from (Arabidopsis thal...
        Distance: 1117; Region: intergenic
      • AT1G63050.1 - [+] show detail - MBOAT (membrane bound O-acyl transferase) family protein
        Distance: 2694; Region: intergenic
    Flanking Genome Sequence: ET8076 - 3-prime edge 
    TACTTAAATT TGCATATAAT GCTATATAAT GCTCAGGTCA TCGTATCTGA 
    CGCTAAAGCA GTGTCATGAT GTAAAAAATA ATCACTACTT AAAAATTTGA 
    TTTTTAAGAC ATGTCTCAAC ACTTGACTCT GATTTTGGCA TTGAATCATC 
    GAAAAGTCCT TCTTCTTTTT TGTCTTCTTT ATAAGCTTTA ATCTTTGTCA 
    AAGCAATATA TATAACGTCT TATTAATTTC ACAAAAGATA GATATATAGT 
    GCTACATATG GTACTGTCAA CTGGACTA

AT1G63040.1

Model type
Pseudogene
Curator Summary
a pseudogene member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The translated product contains one AP2 domain. There are 17 members in this subfamily including TINY.
Computational Description
pseudogene, DRE binding protein, similar to GI:3738224 from (Arabidopsis thaliana) (Plant Cell 10 (8), 1391-1406 (1998)); blastp match of 38% identity and 3.9e-24 P-value to GP|18535580|gb|AAK57551.1||AY034473 putative transcriptional activator CBF1 {Lycopersicon esculentum}
Link
InterPro Scan - TAIR

AT1G63050.1

Model type
Protein coding
Short Description
MBOAT (membrane bound O-acyl transferase) family protein
Computational Description
MBOAT (membrane bound O-acyl transferase) family protein; FUNCTIONS IN: acyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Membrane bound O-acyl transferase, MBOAT (InterPro:IPR004299); BEST Arabidopsis thaliana protein match is: MBOAT (membrane bound O-acyl transferase) family protein (TAIR:AT1G12640.1); Has 1074 Blast hits to 1071 proteins in 250 species: Archae - 0; Bacteria - 147; Metazoa - 624; Fungi - 142; Plants - 47; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).
Link
InterPro Scan - TAIR