ET8101

CSHL Arabidopsis genetrap mutant lines

Original: ET8101

Phenotypes

Morphological phenotypes

Original description

  • dwarf mutant
Anatomical entity
/structure development stage		 Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)

Original: ET8101

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1885496 [Map]; Strand: c
      • AT1G06170.2 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 0; Region: exon2 (CDS)
      • AT1G06170.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: ET8101 - 3-prime edge 
    TTTACCGACC GTTACCGCCC GTTTTCATCC CTAGTTACTT CATCGTCTAT 
    GATACGTACA TCGACATCAG TGAATTTCGA TTTCCTCTTG AGCCATGAGC 
    ATCTCAAGGC ATTGTTCTTC TTATTGATCA AACATTGTTC TACTACTTCG 
    CTTTGAGCCT TGAAGTTCTC ATCAACAACA TCATCTCCTT CTCTGTTCCT 
    CTGTTTCACT CTCTTCAT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1885346 [Map]; Strand: c
      • AT1G06170.2 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 0; Region: exon2 (CDS)
      • AT1G06170.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: ET8101 - 5-prime edge 
    ACCAACTTGA GCTTGATCTT CACCATGTAG CTGGTGCACA AATCGGAGAG 
    CACCACAGTT TCTTGTTCAA CGCCAAGGTT TGTCATAAAA TCTCAATTTA 
    ATCCATAGTC AGACACTATT AGACTAACTA ACGAATTGTG ATATAACAGA 
    TTAGTGAAGG ATCTAGTGTT TATGCAAGTG CCATAGCAGA TAGAGTAATG 
    GAAGTGTTGG CGAAACAATA CATGGAAGCT CTTTCGGCGA ATAATGGTTA 
    TCACTGTTAC TCTAGTGATT AAAGCGTTTT CATC

AT1G06170.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT2G31220.1); Has 1258 Blast hits to 1258 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 1252; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G06170.2

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT2G31220.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR