ET8193

CSHL Arabidopsis genetrap mutant lines

Original: ET8193

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET8193

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4806111 [Map]; Strand: c
      • AT3G14385.1 - [+] show detail - MIR169F; miRNA
        Distance: -261; Region: promoter
      • AT3G14390.1 - [+] show detail - Pyridoxal-dependent decarboxylase family protein
        Distance: -614; Region: promoter
    Flanking Genome Sequence: ET8193 - 3-prime edge 
    GATTTTTGAC CAAAACCCTA ATTCAAGAAT AGAATCCAAA AGATGGGATC 
    AAAGAATATA ATCTAATGGG CTGACCACAT TTTCAGATTT AATTCGCATA 
    GTTAATATTC TTTCCACTAC TTTATGCCGC AGAAATTTGT AATTAAGTAA 
    GACAAAGAAA TACAGATATA AGATGGTCGT AGAAACCAGT AGAGGAATTT 
    CATTTTTCGT GGATAAGTGG AATATTAATA AGAGAATGGT CTTTACTCTT 
    TACAGTGGGA AATGGGAATA GTAGCCCATT ATAATTTCAT CAGATTCTAT 
    ATATGCATGT TTGTATAAGC TAAAATAAAT ACGTTTAAGC ATTCTTCAAA 
    AAAATTTACA AGTTCTAGAG ACTCTCTTAA CGTCGGCAAT TTATATTCTA 
    CTTTACATGA CACTTTCAGG AAAAGAAAAC TATACTCACT AGCAGATCAT 
    TAAATTTTCT TTTTCTTTTT TTGAATGAAC C

AT3G14385.1

Model type
miRNA
Short Description
MIR169F; miRNA
Curator Summary
Encodes a microRNA that targets several HAP2 family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGAGCCAAGGAUGACUUGCCG
Link
InterPro Scan - TAIR

AT3G14390.1

Model type
Protein coding
Short Description
Pyridoxal-dependent decarboxylase family protein
Computational Description
Pyridoxal-dependent decarboxylase family protein; FUNCTIONS IN: diaminopimelate decarboxylase activity; INVOLVED IN: lysine biosynthetic process via diaminopimelate; LOCATED IN: chloroplast; EXPRESSED IN: guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: Alanine racemase/group IV decarboxylase, C-terminal (InterPro:IPR009006), Ornithine/DAP/Arg decarboxylase (InterPro:IPR000183), Orn/DAP/Arg decarboxylase 2, N-terminal (InterPro:IPR022644), Orn/DAP/Arg decarboxylase 2, C-terminal (InterPro:IPR022643), Diaminopimelate decarboxylase (InterPro:IPR002986), Orn/DAP/Arg decarboxylase 2, conserved site (InterPro:IPR022657), Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site (InterPro:IPR022653); BEST Arabidopsis thaliana protein match is: Pyridoxal-dependent decarboxylase family protein (TAIR:AT5G11880.1); Has 13020 Blast hits to 12980 proteins in 2586 species: Archae - 150; Bacteria - 7800; Metazoa - 435; Fungi - 194; Plants - 400; Viruses - 27; Other Eukaryotes - 4014 (source: NCBI BLink).
Link
InterPro Scan - TAIR