ET8237

CSHL Arabidopsis genetrap mutant lines

Original: ET8237

Phenotypes

Morphological phenotypes

Original description

  • dwarf mutant
Anatomical entity
/structure development stage
Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)

Original: ET8237

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 16606752 [Map]; Strand: w
      • AT5G41505.1 - [+] show detail - transposable element gene
        Distance: -524; Region: promoter
      • AT5G41510.1 - [+] show detail - F-box and associated interaction domains-containing protein
        Distance: -372; Region: promoter
    Flanking Genome Sequence: ET8237 - 3-prime edge
    GCAATCCATG TGCTCATCAG AAAATAAAAT GCTAAAACCC ATCTGAATAA 
    TGTAGTTTAG AGAACCAAAT ATTCTATAGT CTTGAACTAA ATTCTTCTTT
    TTTTTTACAC CCCATTCTCT CTGAACTTAA TCATGAGTTC TTAAGGGCCT
    TAAATATACC ACACTAGCTC CTGAAATTAA GTCTTGCCTA AAATAATCTT
    CTCAACTCTT TGACTATTGG CTTGTTAAAT TGTCGTGAGT TAACTCTTTC
    GTGCTCTTGC ACTAAGTTCG CTTCTCATTA CTCATTTCAT TGGTTCGGAA
    ACTCTTTCAT TGAATTATAA ACATTCTCTT GTACAACTAC TCAAATCACA
    TAACTAAACT TATTTGTTTA AAGCTGTTCA AATTAAATGG CTTGGAAGAA
    TGATTAATTA ATTCGTTTTA ACATCCTGAG ATAGATGAGA TCGAGATGCT
    CTAATGGTAC CGAGATGCTT ATTCTGTATT TTGACATTTC ATAC

AT5G41505.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G13655.1); similar to hypothetical protein 23.t00046 [Brassica oleracea] (GB:ABD65629.1); contains domain NON-LTR RETROELEMENT REVERSE TRANSCRIPTASE RELATED (PTHR19446:SF34); contains domain REVERSE TRANSCRIPTASES (PTHR19446)
Link
InterPro Scan - TAIR

AT5G41510.1

Model type
Protein coding
Short Description
F-box and associated interaction domains-containing protein
Computational Description
F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT5G41500.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR