ET8238

CSHL Arabidopsis genetrap mutant lines

Original: ET8238

Phenotypes

Morphological phenotypes

Original description

  • dwarf mutant
Anatomical entity
/structure development stage		 Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)

Original: ET8238

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2414394 [Map]; Strand: w
      • AT1G07795.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon1 (5UTR)
      • AT1G07800.1 - [+] show detail - transposable element gene
        Distance: -647; Region: promoter
    Flanking Genome Sequence: ET8238 - 3-prime edge 
    GTTTTCATCC CTAATCAGAA GATATGGGGA TTGTTTTAGC GTGGATCACA 
    AGAATTAGGT GTTGGTTTGC GAGGAAACGA AAAGATTGTG AGATCGATGA 
    GCAAAAACCA GAGCTTGTTT GATTGGTGCG GTTTATGTGT TTGGAAACGG 
    AAATGAAAAT GGAAAGGCTG CTTCTTTGCA CGTTTAACTA ACTACTCTTG 
    GTTCCCATAC ACACACAGAG AGTTGTTAAT TACGAATTTA CCCTTCCCTT 
    TGAACTCTTC TCTTCTTCTT TTGCCCTTCC GGGTCGTCTC CTTCCCCTTT 
    GACACTCCCA CGTTTTCAGC AATATCAATT TTTGTTTAAT CGACGGCTGT 
    ATTAGTTGGT TGTTAAGAAA TTTCAGACTC GTTCCTCCAT AATTCAGATA 
    TAGGAGGAGA ACATAAACTA TATTATATGA TTATGGAGTA ATGACAGTGA 
    TTTATGCTTT ATGTTGTTCA CCAAAAACTA TTCATTAAAA TTAAGCGGGT 
    TCACCTAAAT CTGATGCTTA TAGCCTGCTT GTGGCACAAC GATAACGATA 
    GGTGATTCAA CTACTAATCT TCAATTTTAT CTATTTCAAT GACTCCAATC 
    ATATCATAAT TAGACTCTGT TCGTTATAAG AAGGTGAGAA AGCAACATCA 
    TTGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2414564 [Map]; Strand: w
      • AT1G07795.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon1 (CDS)
      • AT1G07800.1 - [+] show detail - transposable element gene
        Distance: -477; Region: promoter
    Flanking Genome Sequence: ET8238 - 5-prime edge 
    GTTGGCCGGT CATCGCTCAG GCTGCCACGT GGACGGTGCT TCTAATGTTC 
    ACGGTGGCCG TCGCTTCGTT TGCTCCGGAG ATGGCTTTTG TGTCTACGGT 
    GTCGTCTTCG TGCGGAGGAG GATTATGGTT TCGTGAAGAT TCCGATGGAT 
    GGGGCAGGGG AGAGTATATG CGTGCCGTCT AATATGGTGA AGAGATCGCG 
    TTT

AT1G07795.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G28725.1); Has 38 Blast hits to 38 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G07800.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, similar to putative reverse transcriptase., blastp match of 24% identity and 5.3e-10 P-value to GP|21450442|gb|AAM54146.1|AC104616_5|AC104616 putative reverse transcriptase. {Oryza sativa (japonica cultivar-group)}
Link
InterPro Scan - TAIR