ET8245

CSHL Arabidopsis genetrap mutant lines

Original: ET8245

Phenotypes

Morphological phenotypes

Original description

  • dwarf mutant
Anatomical entity
/structure development stage
Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)

Original: ET8245

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1530216 [Map]; Strand: c
      • AT1G05260.1 - [+] show detail - Peroxidase superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: ET8245 - 3-prime edge
    TGCTTATAAA CTCAACGTCA GGAAACGCAG AGAGAGACGC GACTCCTAAC 
    CTAACGGTTC GAGGGTTTGG CTTCATCCAC GCAATTAAAT CTGTGCTTGA
    AGCTCAATGC CCTGGAATTG TCTCTTGCGC TGATATTATC GCTCTAGCTG
    GTCGCGACAC TGTCGTTTTC ACCGTAAGCA TCATATTCAT CACATAACAT
    TACTCTCAAT TAAAAAATAT TAATTAGTAT TTCTGATCAT AAATTCTGAC
    CTTTGGTATG TTGTATGGAG GACCCAATTG GAGTGTACCG ACCGGAAAAA
    CAGACGGGAG GATATCAAAC GCATCGGACG CATTACCCAA CATTCCTTCT
    GCAACCAGTA ATATCACCAA TCTTCAGACA CTGTTTGCCA ACCAAGGACT
    TGATCTTAAG GACCTCGTTT TACTATCCGG GAAAGCCTAC ACTCATTCCA
    CACTCTAAGA ATAAAAAAT
  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: ET8245 - 5-prime edge
    TCCACTATAT AAAGAAAA

AT1G05260.1

Model type
Protein coding
Short Description
Peroxidase superfamily protein
Curator Summary
Encodes a cold-inducible cationic peroxidase that is involved in the stress response. In response to low temperature, RCI3 transcripts accumulate in the aerial part and in roots of etiolated seedlings but only in roots of light-grown seedlings.
Computational Description
RARE COLD INDUCIBLE GENE 3 (RCI3); FUNCTIONS IN: peroxidase activity; INVOLVED IN: response to desiccation, response to cold, hyperosmotic salinity response; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Peroxidase, active site (InterPro:IPR019794), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT3G21770.1); Has 4433 Blast hits to 4402 proteins in 259 species: Archae - 0; Bacteria - 4; Metazoa - 3; Fungi - 76; Plants - 4304; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).
Link
InterPro Scan - TAIR