ET8276

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

embryo lethal

Anatomical entity /structure development stage	Phenotypes
seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997)

Original: ET8276

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 1; Position: 20672290 [Map]; Strand: c
- AT1G55360.1 - [+] show detail - Protein of Unknown Function (DUF239)
  Distance: -3564; Region: intergenic
- AT1G55365.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
  Distance: 1693; Region: intergenic

TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC TACTTGCAAG 
TCAAGTCATA GCTATGTAAC TTTCTTTATT TAAATTTGAA TACCCTATAA 
CAACAAAAAA AAAGCTCAAC TCAAATAGAT TGTCTTGAGG TAAAATGAAG 
ATGTAGACCA TGTTTTCTTG TAAAGAAGAG AGAGAGAGAG ATATTTTGTA 
TTTCTTTGAA GATTGTTGAC AAATACTAGA CTGTTTATCA TTGCATACTA 
TCAACAAATC GATCACTTGA TTGTCGACAC AACAATCACT TGTGATGCAA 
CAAGGGACTT GAGGAGTTAA GGAAAAGCAG ACAATTTTGT CAAAGAGAAC 
TTTTATGTTA ACCTATCCAA AACCACAAGA AGTCCCTGTC TCTCAAGATT 
TCCAATCTGA GAAAACTTGT TTATTGGGTT CATGATTTTA ATCTCAGGGT 
CTAAACCACT CGGTTTGTGT AGAGTCTTAC TAGGAAATGA GAACAAACTA 
A

3 prime edge [+] show sequence
1. Chromosome: 1; Position: 20672296 [Map]; Strand: c
  - AT1G55360.1 - [+] show detail - Protein of Unknown Function (DUF239)
    Distance: -3570; Region: intergenic
  - AT1G55365.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
    Distance: 1687; Region: intergenic
Flanking Genome Sequence: ET8276 - 3-prime edge
```
TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTACTTG CAAGTCAAGT 
CATAGCTATG TAACTTTCTT TATTTAAATT TGAATACCCT ATAACAACAA 
AAAAAAAGCT CAACTCAA
```

5 prime edge [+] show sequence

Chromosome: 1; Position: 20672215 [Map]; Strand: c
- AT1G55360.1 - [+] show detail - Protein of Unknown Function (DUF239)
  Distance: -3489; Region: intergenic
- AT1G55365.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
  Distance: 1768; Region: intergenic

TTGCAAGTCA TAAAGATTTT GTTCAAAGCT TACAAGAGAG TGGGGTAGAG 
AAGCGACATG CTTACATCTA AGGTTTCAAA ATTACATGGA AAGAGCTACA 
AGATAATCTG TGATGATCGA TTCAATCTAG CTTACAAGAG ATTTTGAGTT 
GAGCTCTTGA CTCATGTGAA TCTGTGATGA TCAATCTGGA GAAAAAAATG 
CAGTTGATAA CAGTTTCAAC TTTAAAACAT TGTTAAGACT TTTCAAAAGT 
TTGGTACTTT CTAGAGACAA CATTGTTGAG AATCAGATCA GAGTCTCAGA 
TTCAGTTTAT AACTTAGCTC AAGTTTATAT CTCACAAAGA TAAATAAAGA 
GTTTATATCA GTTGCTGGTG GCTGAATCTG ATAGTTACCA AGGCGAGGTT 
AATATTCTAT ATGGGTTGGG C

5 prime edge [+] show sequence
1. Chromosome: 1; Position: 20672217 [Map]; Strand: c
  - AT1G55360.1 - [+] show detail - Protein of Unknown Function (DUF239)
    Distance: -3491; Region: intergenic
  - AT1G55365.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
    Distance: 1766; Region: intergenic
Flanking Genome Sequence: ET8276 - 5-prime edge
```
GCTTGCAAGT CATAAAGATT TTGTTCAAAG CTTACAAGAG AGTGGGGTAG 
AGAAGCGACA TGCTTACATC TAAGGTTTCA AAATTACATG GGAAAGAGCT 
ACAAGATAAT CTGTGATGAT CGATTCAATC TAGCTTACAA GAGATTTTGA 
GTTGGAGCTC TTGACTCATG TGAATCTGTG ATGATCAATC TGGAGAAAAA 
AAT
```

AT1G55360.1

Model type: Protein coding
Short Description: Protein of Unknown Function (DUF239)
Computational Description: Protein of Unknown Function (DUF239); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT3G13510.1); Has 753 Blast hits to 700 proteins in 28 species: Archae - 0; Bacteria - 15; Metazoa - 0; Fungi - 10; Plants - 728; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G55365.1

Model type: Protein coding
Computational Description: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13500.1); Has 29 Blast hits to 29 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR