ET8345

CSHL Arabidopsis genetrap mutant lines

Original: ET8345

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET8345

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28134333 [Map]; Strand: c
      • AT1G74900.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET8345 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCC CTAACCTTCG CAATCGTCGC 
    CGAGAAGTAC GCATCCGCTG GGAAGCCCGA TAAAGCGGTT AAGCTGTTTC 
    TGAATATGCA CGAACATGGT TGTTTTCAAG ATTTAGCTTC TTTCAATACG 
    ATTCTCGATG TGTTGTGTAA ATCTAAACGC GTAGAGAAAG CTTATGAGTT 
    GTTTAGAGCT CTTAGGGGAA GATTTAGTGT TGATACAGTT ACTTACAATG 
    TGATTCTTAA CGGTTGGTGT TTGATTAAAA GGACGCCTAA GGCTTTAGAA 
    GTTTTGAAAG AGATGGTTGA GAGAGGGATA AACCCTAATT TGACTACTTA 
    TAACACAATG CTCAAAGGTT TTTTCAGAGC TGGGCAGATT AGACATGCTT 
    GGGAATTCTT CTTGGAGATG AAGAAACGGG ATTGTGAAAT AGAATGTTGT 
    CACTTATACT ACTGTGGTTC ACGG

AT1G74900.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
organelle transcript processing defect 43 (OTP43); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G77360.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR