ET8346

CSHL Arabidopsis genetrap mutant lines

Original: ET8346

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET8346

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1414480 [Map]; Strand: c
      • AT5G04860.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: ET8346 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCC CTACAATTCA CAAGTGGCTG 
    CAACAAAAAA CCTGGAAGGT TTGGAATCTT AGAGAAAAAG GGTGTTGGAG 
    TAATCGAGAT TTGCGGAGGA AAGAATCGGA TTTTAAGAGA TGGAGATGGA 
    GGATTTGGTG GACGCGGTGT GATTCAGACG CAAAATATTT GAAATTTGAA 
    GAAAGTGAGA GACAGAGAGA GAAAAGAGTA GAGAGAAGGA ATCTCTGCGT 
    TTGTTTTCTT TAGAGTCAAC CCTTATAGAG ATAGAGAGAG AAAAGGACGG 
    TAATATTAAA TTGTTGATTA CAATAATTAA ATAATGTATA TAATTTAAAA 
    TTATGTTTGA CATTTTTTTC TTCTGTTTTT AGTATAAAAG TTTTATATAA 
    TTATCATTTT GGAGAAATAT AATTAATTCT AAAACTGAAA ATTAATTAAC 
    GTTGTGTGAT TACCTTCTTT TCTTTTTTGT AACTACAATT TTCAAGTAGT 
    CTGTTACTTT CTTTCTTTTT TCTTGAAATA TTATTGTAGA GATTTTGTTC 
    ACCGGTAATT ATAAGATTAT CCGGTTTAAT ATAGAGAAAT GTGAGGAATA 
    AGTCAATCTT TTATTGCATT TATAGATAAA CCCAATAAAT GCTATAACTA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1414511 [Map]; Strand: c
      • AT5G04860.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: ET8346 - 3-prime edge 
    TACAATTCAC AAGTGGCTGC AACAAAAAAC CTAAAAGGTT TGGAATCTTA 
    GAGAAAAAGG GTGTTGGAGT AATCGAGATT TGCGGAGGAA AGAATCGGAT 
    TTTAAGAGAT GGAGATGGAG GATTTGGTGG ACGCGGTGTG ATTCAGACGC 
    AAAATATTTG AAATTTGAAG AAAGTGAGAG ACAGAGAGAG AAAAGAGTAG 
    AGAGAAGGAA TCTCTGCGTT TGTTTTCTTT AGAGTCAACC CTTATAGAGA 
    TAGAGAGAGA AAAGGACGGT AATATTAAAT TGTTGATTAC AATAATTAAA 
    TAATGTATAT AATTTAAAAT TATGTTTGAC ATTTTTTTCT TCTGTTTTTA 
    GTATAAAAGT TTTATATAAT TATCATTTTG GAGAAATATA ATTAATTCTA 
    AAACTGAAAA TTAATTAACG CTGTGTGATT ACCTTCTTTT CTTTTTTGTA 
    ACTACAATTT TCAAGTAGTC TGTTACTTTC TTTCTTTTTT CTTGCAAATA 
    TTATTGTAGA GATTTTGTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1414364 [Map]; Strand: c
      • AT5G04860.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET8346 - 5-prime edge 
    ATGCGTTGGC CACCGTGGCC TCCGGTCTTC GCCGTTAAAT TCAACGTGAT 
    CGAGGTTGTT CACCAGATGG ATGGTTTGTT GGATTCCGAT GGTGGTGGCG 
    ATGATAGTAC TGATCAGAGT CAGCGAGGAG GAGGGACAAC AACGAGGAAG 
    AGACCTGTTG TTGAGATCAA ATGGAAAGGA GGGGGGTCGG TTACTCTCAA 
    ACGCTCCGTC GTACGGAATC TCACCGAAGA AGGTGGATTT CGCGGCGATG 
    GCGTCGTTGA ATGGAACGAA GAGTTTAAGA GGGTTTGCGA ATTCTCTGTT 
    TACAAGGAAG GATCGTTTCT TCCTTGGTTC GTTTCTTTAA CCGTCTTCAG 
    TGTTAGTCTC TCTCTCTATC TCCTATCTTC TTTTAATTTC GNTGACTTTG 
    ATGTCTGAAT GATCAGGGTC TGTTTAAAGG TTGTACCTTT GCTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1414364 [Map]; Strand: c
      • AT5G04860.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET8346 - 5-prime edge 
    ATGCGTTGGC CACCGTGGCC TCCGGTGCTT CGCCGTTAAA TTCGACGTGA 
    TCGTCGTTGT TCACCAGATG GATGGTTTGT TGGATTCCGA TGGTGGTGGC 
    GATGATAGTA CTGATCAGAG TCAGCGAGGA GGAGGGACAA CAACGAGGAA 
    GAGACCTGTT GTTGAGATCA AATGGAAAGG ACCTAGGTCG GTTACTCTCA 
    AACGCTCCGT CGTACGGAAT CTCACCGAAG AAGGTGGATT TCGCGGCGAT 
    GGCGTCGTTG AATGGAACGA AGAGTTTAAG AGGGTTTGCG AATTCTCTGT 
    TTACAAGGAA GGATCGTTTC TTCCTTGGTT CGTTTCTTTA ACCGTCTTCA 
    GTGTTAGTCT CTCTCTCTAT CTCCTATCTT CTTTTAATTT CGTTGACTTT 
    GATGTCTGAA TGATCAGGGT CTGTTTAAAG GTTGTACCTT TGC

AT5G04860.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11760.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR