ET84

CSHL Arabidopsis genetrap mutant lines

Original: ET84

Phenotypes

Morphological phenotypes

Original description

  • apetala-like
Anatomical entity
/structure development stage		 Phenotypes
flower (PO:0009046)
  • abnormal (PATO:0000460)

Original: ET84

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19365627 [Map]; Strand: c
      • AT5G47818.1 - [+] show detail
        Distance: -948; Region: promoter
      • AT5G47820.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: -856; Region: promoter
      • AT5G47820.2 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
        Distance: -856; Region: promoter
    Flanking Genome Sequence: ET84 - 3-prime edge 
    ATTGTTAGTT GCAAATATAA GGAAAACGAA TTAAACTTAA AACTTACAGT 
    TGTAATTTAG GTGAGCACAT AATTGCTAAA TAAACTCTAA AAGGAATGTA 
    TTCAATCAAA CATTTTAGGT GATTTGTATT TAAATAACAA ATTTTATGGT 
    TATTCAATTA GGGATTTTAA AAAATCTCAN GAAANCTAAN GCTATTAAAC 
    TATTGATTTT AAAATCTANT TAAAANTCCT TNGTTATTAA AAACNTTTTA 
    AAAATTAANT TTTTAATGAC TTTAAAAAAA ATTTTANTGG ATTNCCTTAN 
    TTAAAAATAT AAAATATAAA NTTNCATGAT TTTANATAAA ATTTAANAAA 
    NTTTTACAAT AA

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26599602 [Map]; Strand: w
      • AT1G70550.2 - [+] show detail - Protein of Unknown Function (DUF239)
        Distance: 0; Region: exon7 (CDS)
      • AT1G70550.1 - [+] show detail - Protein of Unknown Function (DUF239)
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: ET84 - 5-prime edge 
    GTGGCTACAA TTCGGGTCAG GTGCATTAGT CGGTTATTGG CCAGCGTTTT 
    TATTCACGCA TCTAAAGCAA CATGGAAGCA TGGTCCAATT CGGGGGCGAG 
    ATTGTGAACA ACCGACCCGG CGGTTCACAC ACTACGACTC AAATGGGTAG 
    TGGACATTTT GCCGGTGAAG GTTTTGGTAA AGCATCTTAT TTCCGGAATC 
    TCCAAATTGT TGACTGGGAC AACACTCTTA TACCCGCTTC GAATCTAAAG 
    ATTCTCGCAG ACCATCCCAA TTGTTATGAT ATAAGAGGTG GGACGAATCG 
    TGTGTGGGGT AACTATTTTT ACTATGGAGG TCCAGGAAAA AACCCTAAAT 
    GTCCATGAAC AATCAAGAAA ACAAAAGCAG AAAAAGGTTA TTGATTATTA 
    TTCTTACATG TAGTGCACAT GAATTTTGGG ATTAAGGGAG ATTAGGAATT 
    TACATTGCCG CTACGTGTTT TGCCAATATC ATGT

AT1G70550.1

Model type
Protein coding
Short Description
Protein of Unknown Function (DUF239)
Computational Description
Protein of Unknown Function (DUF239); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT1G23340.2); Has 775 Blast hits to 727 proteins in 29 species: Archae - 0; Bacteria - 13; Metazoa - 0; Fungi - 10; Plants - 752; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G70550.2

Model type
Protein coding
Short Description
Protein of Unknown Function (DUF239)
Computational Description
Protein of Unknown Function (DUF239); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT1G23340.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G47818.1

Model type
Pseudogene
Curator Summary
unknown pseudogene
Link
InterPro Scan - TAIR

AT5G47820.1

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator Summary
encodes a kinesin-like protein with an N-terminal microtubule binding motor domain. Protein is localized to the periphery of the cytoplasm and mutants in the gene exhibit altered orientation of cellulose microfibrils and reduced mechanical strength of fibers.
Computational Description
FRAGILE FIBER 1 (FRA1); CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: ATP binding microtubule motor family protein (TAIR:AT3G50240.1); Has 53631 Blast hits to 37823 proteins in 1811 species: Archae - 386; Bacteria - 4938; Metazoa - 26865; Fungi - 4658; Plants - 3439; Viruses - 113; Other Eukaryotes - 13232 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G47820.2

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator Summary
encodes a kinesin-like protein with an N-terminal microtubule binding motor domain. Protein is localized to the periphery of the cytoplasm and mutants in the gene exhibit altered orientation of cellulose microfibrils and reduced mechanical strength of fibers.
Computational Description
FRAGILE FIBER 1 (FRA1); CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: ATP binding microtubule motor family protein (TAIR:AT3G50240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR