ET8405

CSHL Arabidopsis genetrap mutant lines

Original: ET8405

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET8405

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10924371 [Map]; Strand: c
      • AT4G20230.1 - [+] show detail - Terpenoid cyclases/Protein prenyltransferases superfamily protein
        Distance: 0; Region: exon7 (CDS)
    Flanking Genome Sequence: ET8405 - 3-prime edge 
    GTTTTCATCC CTAATTGTAG GTGACGATGA TCATGCGTGC AAAATCCATG 
    GTTTCCCTAA GAACATAATG TGGCACGCAA GTGGTTGTCA AGAACTCCTC 
    ATTTAATGTC TTATGTGTAT TTACAACCAT TTTACGAATC TCCTTAAAAG 
    CTTCCTTTTC AGTAACTCCG TATTGCTTCA T

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10923253 [Map]; Strand: c
      • AT4G20220.1 - [+] show detail - Reverse transcriptase (RNA-dependent DNA polymerase)
        Distance: 857; Region: intergenic
      • AT4G20230.1 - [+] show detail - Terpenoid cyclases/Protein prenyltransferases superfamily protein
        Distance: 868; Region: intergenic
    Flanking Genome Sequence: ET8405 - 5-prime edge 
    ATAATCAAGG AGTATATGAC TCCGGTATTC GTCGATCAGA TCGATCTTTG 
    AAGTCTTTGA AGATGTTGTA GTGTTTGATT CAGGATTGAG GCATTTGTTT 
    TCTTTCTAGT TTCTCTTACA ACTTCCTATA TATGCTTGGT TTCTACTGTC 
    TACAATTAGA TTGTGTGTCT TTTGAATTAG CGAAAAGCTT TGTGTGTGTG 
    TGTGTGTGTT GTTATAATTG ATGTTGGTTG ATCTCTTTGA ATAAGTAAAA 
    TGCTTGCTAC ATATACAGAA GCACCTAGTT CA

AT4G20220.1

Model type
Protein coding
Short Description
Reverse transcriptase (RNA-dependent DNA polymerase)
Computational Description
Reverse transcriptase (RNA-dependent DNA polymerase); CONTAINS InterPro DOMAIN/s: Reverse transcriptase, RNA-dependent DNA polymerase (InterPro:IPR013103); Has 55 Blast hits to 55 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20230.1

Model type
Protein coding
Short Description
Terpenoid cyclases/Protein prenyltransferases superfamily protein
Computational Description
Terpenoid cyclases/Protein prenyltransferases superfamily protein; FUNCTIONS IN: lyase activity, magnesium ion binding; INVOLVED IN: metabolic process; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: Terpenoid cyclases/Protein prenyltransferases superfamily protein (TAIR:AT4G20200.1); Has 1640 Blast hits to 1613 proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 1633; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR