ET8422

CSHL Arabidopsis genetrap mutant lines

Original: ET8422

Phenotypes

Morphological phenotypes

Original description

  • stunted plants with sickly, roughened leaves
Anatomical entity
/structure development stage
Phenotypes
vascular leaf (PO:0009025)
  • increased width (PATO:0000600)
sporophyte vegetative stage (PO:0007134)
  • abnormal (PATO:0000460)

Original: ET8422

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: ET8422 - 3-prime edge
    GTACTTTTGT GGGCTTGCTT TTGGTGT
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 7950629 [Map]; Strand: c
      • AT4G13670.1 - [+] show detail - plastid transcriptionally active 5
        Distance: 0; Region: intron5 (CDS)
    Flanking Genome Sequence: ET8422 - 3-prime edge
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTATG 
    TGTATGTATG TATTATCAAG TAGCCTAAAG CAGAGAAGCT CTTGTTCAAT
    GTTGTAGTTC ATGGAGTGGG TTGGTGAAGA TACGAAGTGT CCGTACTGTG
    AAGGTCTTGG CTATACAGTT TGCGATGTCT GCGACGGCAA AAAAAACTTA
    TAATAATGAT TCATATTTAA TTTAATGAAA AAACAAATTA GTTTGTTTTC
    CAAATCGCAT AATATGGTTG TTTAAGAGAG ATATATATAT AAATTTAGTG
    AACAAGTACG TATGTTAGTT TGTTTTTC
  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 7950495 [Map]; Strand: c
      • AT4G13670.1 - [+] show detail - plastid transcriptionally active 5
        Distance: 0; Region: intron4 (CDS)
    Flanking Genome Sequence: ET8422 - 5-prime edge
    GTTCCATCGC ACTCTACATC AAGTTTTCAT TTTAAAATCA TCAAATAATG 
    TGCTACAACT CAGTGCTTGA AGTGTTACTA AGGTTGGTTT CTATTAGCAG
    TCTCAATTTG CTAAGAAAAA TCATTCTTAA CTTTCAAAGA ACGGATGATT
    TTGACTTAAC CAGGGAGAAG GGATTTACCT AGGCACATCA ATCGACCCTC
    CCCTC
  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 7950572 [Map]; Strand: c
      • AT4G13670.1 - [+] show detail - plastid transcriptionally active 5
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: ET8422 - 5-prime edge
    CTTTCTCCCT GCATACACAT AATCGGAGCG GGGTTATTTT GATTTTACTC 
    ACCTGCGGCT CAATGTTTGG CTCACCGGTT CCATCGCACT CTACATCAAG
    TTTTCATTTT AAAATCATCA AATAATGTGC TACAACTCAG TGCTTGAAGT
    GTTACTAAGG TTGGTTTCTA TTAGCAGTCT CAATTTGCTA AGAAAAATCA
    TTCTTAACTT TCAAAGAACG GATGATTTTC ACTTAACCAG GGAGAAGGGA
    TTTACCTAGG CACATCAATC GACCCTCCCC TCGACAAGTG ATGCACCTCG
    TTTTGGTGTT TGTTGATTCA CCTNCTGTCT ACCAGTTTGT TCCTGCCAAT
    GAGCCTGGAG GGATCTTCCC ATCTGTTTTC TCCAAGAAGA AAAACCCGAT
    TTTGAGTAAC GTCAACTTCT CTGTCACTTT GATCTTTCAC GATTGATTGC
    TTCTCTCCAC GCGAATTATG TCACTGAAGT AAATACCGCC CCATTACCAG
    CTTCCTTAAT TAATGGAATT AAAAGAAAGA TCCAGTATAA AGAACCAGTC
    TTAACAGGTG TATTAAGCAA ATTAAGAGAA ATTTCAGAAT ATTCATGTTC
    CCTAAAACCT CAAACAAGAC AATGTAGTAT TTATCCCATT TACCAA

AT4G13670.1

Model type
Protein coding
Short Description
plastid transcriptionally active 5
Computational Description
plastid transcriptionally active 5 (PTAC5); FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding, metabolic process; LOCATED IN: plastid chromosome, chloroplast thylakoid membrane, chloroplast, nucleoid, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidoglycan binding-like (InterPro:IPR002477), Heat shock protein DnaJ, cysteine-rich domain (InterPro:IPR001305); Has 835 Blast hits to 827 proteins in 285 species: Archae - 9; Bacteria - 385; Metazoa - 155; Fungi - 28; Plants - 81; Viruses - 2; Other Eukaryotes - 175 (source: NCBI BLink).
Link
InterPro Scan - TAIR