ET8462

CSHL Arabidopsis genetrap mutant lines

Original: ET8462

Phenotypes

Morphological phenotypes

Original description

  • dwarf mutant
Anatomical entity
/structure development stage		 Phenotypes
whole plant (PO:0000003)
  • decreased height (PATO:0000569)

Original: ET8462

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 4410 [Map]; Strand: w
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon20 (CDS)
      • AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon19 (CDS)
    Flanking Genome Sequence: ET8462 - 3-prime edge 
    GTTATGGGTC TTAATTTTTG GCAGGTCGGA TTTTGCAATC TAATTAAAAG 
    AGCAAAGGAT GTGACAAACG AAATTTGGGT TGCTGAGGCA GCAGAGAACT 
    CAGTCTACTT CATAAACGCA GAAGCTGCCT ACTCTTCTCA CCTCAAAACA 
    GGGGTGCCCA TATCCAAACA TGGGCTAAGC TCTCTTCTTC CAAATCCGTT 
    C

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 4634 [Map]; Strand: w
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon19 (CDS)
      • AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon18 (CDS)
    Flanking Genome Sequence: ET8462 - 5-prime edge 
    ATGGCTGATG TGGGAAACAG AGCTATCATC CATGAATGAG GTGCTGAAGC 
    TTATAGCAAG AAGACTGTTT GAGATTTCCC CTGAATGTTG TGCGGATCCA 
    TCTGTCACAA ACACCCACTG CTTCTTTTGT AGAACATCCG TGTATGCATT 
    TGCAACATAT ACAACGTACG CAGCGATATC AAATTCACTG AAGGACATAA 
    TTAGAGATGA CAGGGTATAG ATTAGCAAAG TGCGGTAAAG AGTGTTTCAT 
    AAAAAGCTTG GACTACTGAG ATTAACCTTG AAAGAGGAAT TTCACCAAGA 
    TTTGACAAAG AGATTGGTTT ACGAGGGTTG AAAAAGGGCC TGAAAACATC 
    ATCAGGGAAA TTGAACAAAT TAATGAGATA GATTCCAGTG TGTCTACTAA 
    AGAAAACCAC TTACTGAAAA TTTTCAGAAT CTTTTGGAGA CAAAGGCTGC 
    CATCTTGAGC TTGACCCTCT CGCATGTAAG TAAAGTATTT CTGAATCTGA 
    GTTTATTGGT ACTAGCCCTT TCATCATGTA TATTTTCCCC TCTGTCAGCT 
    CGGTTCTCTG TCACAGTAGT AGACAATGAT AACTG

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 4667 [Map]; Strand: w
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon19 (CDS)
      • AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon18 (CDS)
    Flanking Genome Sequence: ET8462 - 5-prime edge 
    GAATGAGGTG CTGAAGCTTA TAGCAAGAAG ACTGTTTGAG ATTTCCCCTG 
    AATGTTGTGC GGATCCATCT GTCACAAACA CCCACTGCTT CTTTTGTAGA 
    ACATCCGTGT ATGCATTTCC AACATATACA ACGTACGCAG CGATATCAAA 
    TTCACTGAAG GACATAATTA GAGATGACAG GGTATAGATT AGCAAAGTGC 
    GGTAAAGAGT GTTTCATAAA AAGCTTGGAC TACTGAGATT AACCTTGAAA 
    GAGGAATTTC ACCAAGATTT GACAAAGAGA TTGGTTTACG AGGGTTGAAA 
    AAGGGCCTGA AAACATCATC AGGGAAATTG AACAAATTAA TGAGATAGAT 
    TCCAGTGTGT CTACTAAAGA AAACCACTTA CTGAAAATTT TCAGAATCTT 
    TTGGAGACAA AGGCTGCCAT CTTGAGCTTG ACCCTCTCGC ATGTAAGTAA 
    AGTATTTCTG AATCTGAGTT TATTGGTACT ACATATGGTA CTGTCAACT

AT4G00020.1

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00020.2

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 319 Blast hits to 211 proteins in 92 species: Archae - 0; Bacteria - 11; Metazoa - 140; Fungi - 22; Plants - 61; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
Link
InterPro Scan - TAIR