ET8544

CSHL Arabidopsis genetrap mutant lines

Original: ET8544

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET8544

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26971881 [Map]; Strand: w
      • AT1G71697.1 - [+] show detail - choline kinase 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET8544 - 5-prime edge 
    TTTGAGTGTA TGTCTCATCA TGGTTATGGT CCTAAGCTTC TTGGTCGTTT 
    CTCTGATGGT CGTCTTGAAG AATTCATACA CGCCAGAGTA CGTTTTCTTC 
    TTTCTTTTCT TTAAAGTTTT GATTTTTTTA GGAAGAACAG AGGAAGATAG 
    GTTTAGTTAG TGAGATTAGA GATAAGAATT GTTTGCGTTT CAAGAAATCT 
    CGTGATAGAG AGAGATTGAT TGTGTATGAT TGGTTTGGTC CGTTTACCAG 
    ACTCTTTCTG CAGATGATCT TCGTGTAGCA GAAACATCTG ATTTCATCGC 
    TGCGAAGCTA AGAGAGTTTC ATAAGCTTGA TATGCCTGGT CCAAAGAACG 
    TTC

AT1G71697.1

Model type
Protein coding
Short Description
choline kinase 1
Curator Summary
Encodes choline kinase. mRNA levels are increased in response to wounding.
Computational Description
choline kinase 1 (CK1); FUNCTIONS IN: choline kinase activity; INVOLVED IN: response to salt stress, response to wounding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Choline kinase, N-terminal (InterPro:IPR007521), Choline/ethanolamine kinase (InterPro:IPR002573), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT4G09760.1); Has 1492 Blast hits to 1438 proteins in 366 species: Archae - 0; Bacteria - 350; Metazoa - 439; Fungi - 247; Plants - 163; Viruses - 0; Other Eukaryotes - 293 (source: NCBI BLink).
Link
InterPro Scan - TAIR