ET8791

CSHL Arabidopsis genetrap mutant lines

Original: ET8791

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET8791

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 18828510 [Map]; Strand: w
      • AT1G50800.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: Plant mobile domain protein famil...
        Distance: -172; Region: promoter
      • AT1G50810.1 - [+] show detail - transposable element gene
        Distance: -358; Region: promoter
    Flanking Genome Sequence: ET8791 - 5-prime edge 
    GGCTTGAGAC AAGGCTTTGA ATCATTGTTA CCCACCTCAA GTCTACATTT 
    TTTACCAAGC GGCTCACAAT CTCCTCCACT GTTCTTAATG TTGAAGTATA 
    ATCAAATCTC GCATCATATT TTATTTACAT AAATCAGTTA TTTGATCAAG 
    AGACACAAGT CATGTCTTTT ACAGTTGTGT CTTTAGATCA AGAGTTGTGT 
    CTTTTATCAA GAGTCATGTC TTTTACACAA GACAATGTTT CGTTTCATAT 
    AAGTAAAGAT CGAGTCTTGT TTCTGCAACA CAACACAACA ATTGAGTTTT 
    GTAATACAAT CAAGTCAATA AGATTGATTA CATTCATACT CTGTTTTTTC 
    GTTCTTACTC TGTTCTTCTT TCATAACAAA ACATTAACAT GGTATCAGAG 
    CTTATCGATT GAGAGGACAA GAGAAAACAC TAAAAAGAGA GAGAGGCAAC 
    AAAAGTGAGA TCGTATACGT CTCAGCAAAA AGCGAGACGA TGCAAGACTC 
    CTCACATCAA GTCATCCCTA TATTCGATGG GGAGAAATAT GACTTCTGGA 
    GCATTAAAAT GGCAACCATT TTCAGGACCA GAAAACTATG GTCCGTGGTT 
    GAAGAAGGCG TACCGGTCGA ACCGGTACAA GCGGAAGAAA CTCCTGAAAC 
    TACAAGAGCA AAGACGCTCA GAGAAGAAGC AGTGACAAAT GATACAATGG 
    CTTTGCAAAT CTTTGCAACT GCCGTTACCG ATCAAATCTT CT

AT1G50800.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: Plant mobile domain protein family (TAIR:AT1G50790.1); Has 38 Blast hits to 34 proteins in 9 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 2; Plants - 26; Viruses - 1; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G50810.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 4.6e-216 P-value blast match to gb|AAO73527.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)
Link
InterPro Scan - TAIR