ET8796

CSHL Arabidopsis genetrap mutant lines

Original: ET8796

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET8796

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28603697 [Map]; Strand: c
      • AT1G76240.1 - [+] show detail - Arabidopsis protein of unknown function (DUF241)
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET8796 - 3-prime edge
    ACTGAGACCG TCGGTGATCC AAGAGGTGGT GCGGCTGTGA GTTTCTCCGG 
    CGAATGAGAA CCAGGATTTG AGCTGAGAGA TCTCGTGGTT AACGTGGGAG
    ATTAAGGGAT GAGACCGGCA GGGTAGACTG ATGGGGGTTG TGTGGTGAGA
    GACACGTGGC TTTGACGGTG GAGATGATCG GCCGCAAGGT TTGTTAGGGA
    ATGAGAGTGA TCGTCGGAAA ACTCCAACCA TTCTCGGCGG AGAGAGAGAG
    AAGAGAGAGT TGTTGTGATG GTTTGATTTT GAAATGGTGA AAGATGAGGT
    ACAAGGAGCG TTTATATACG CAAGTTGGTG GGGTTTCGGC AATTGAAGTA
    TGAGATGATG TGCACGTGGG AGAGTTACGC TATTTTTTTA GAATAATTGC
    TTTCTTATT
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28603655 [Map]; Strand: c
      • AT1G76240.1 - [+] show detail - Arabidopsis protein of unknown function (DUF241)
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET8796 - 3-prime edge
    CTGAAGTATA TCAGCGAGCG TTTCTTGAAC GTCCTTGAAA GAGACTGAGA 
    CCGTCGGTGA TCCAAGAGGT GGTGCGGCTG TGAGTTTCTC CGGCGAATGA
    GAACCAGGAT TTGAGCTGAG AGATCTCGTG GTTAACGTGG GAGATTAAGG
    GATGAGACCG GCAGGGTAGA CTGATGGATG TTGTGTGGTG AGAGACACGT
    GGCTTTGACG GTGGAGATGA TCGGCCGCAA GGTTTGTTAG GGAATGAGAG
    TGATCGTCGG AAAACTCCAA CCATTCTCGG CGGAGAGAGA GAGAAGAGAG
    AGTTGTTGTG ATGGTTTGAT TTTGAAATGG TGAAAGATGA GGTACAAGGA
    GCGTTTATAT ACGCAAGTTG GTGGGGTTTC GGCAATTGAA GTATGAGATG
    ATGTGCACGT GGGAGAGTTA CGCTATTTTT TTAGAATAAT TGCTTTCTTA
    TTTCCCCAAC TATATTTTTA TTTAGTTCGG TTAAGATATA CATTTTATAC
    CGTATCTATT TTGTTCTTCC AATTTTACAC GAGCATACAC CTATTTATTA
    GACGTTATAG TACTTTCTTG TTTCAATTTT ACACGATTGT GTATACAACT
    GTATATTAAT T
  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11044571 [Map]; Strand: w
      • AT4G20510.1 - [+] show detail - transposable element gene
        Distance: 0; Region: intron2 (NonCoding)
    2. Chromosome: 4; Position: 11115669 [Map]; Strand: c
      • AT4G20725.1 - [+] show detail - transposable element gene
        Distance: -1303; Region: intergenic
      • AT4G20730.1 - [+] show detail - transposable element gene
        Distance: 2129; Region: intergenic
    Flanking Genome Sequence: ET8796 - 5-prime edge
    GAAAATGTCT CGCAAAAGCT CTAGTTGCAC ATCAAATTTT GTTTCAGACT 
    AGGCACATTG AGGACTATTC CAATTGTTTC TTTTACAGGA AGCAAGATGA
    ATAACTTCTT GATCTTGAGT CCGTTTGACG AACAGTCAGG TGTGGTGGAC
    TATCGGATT
  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: ET8796 - 5-prime edge
    CCCCCCCCCC CCCCCCCCCC CCCCCCCCCC CCCC

AT1G76240.1

Model type
Protein coding
Short Description
Arabidopsis protein of unknown function (DUF241)
Computational Description
Arabidopsis protein of unknown function (DUF241); FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF241, plant (InterPro:IPR004320); BEST Arabidopsis thaliana protein match is: Arabidopsis protein of unknown function (DUF241) (TAIR:AT2G17080.1); Has 409 Blast hits to 404 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 404; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20510.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to filament protein-related [Arabidopsis thaliana] (TAIR:AT4G20730.1)
Link
InterPro Scan - TAIR

AT4G20725.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 1.2e-31 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR

AT4G20730.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to ASY2, DNA binding [Arabidopsis thaliana] (TAIR:AT4G32200.1); similar to filament protein-related [Arabidopsis thaliana] (TAIR:AT3G10100.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G09910.1); similar to hypothetical protein 27.t00126 [Brassica oleracea] (GB:ABD65062.1); contains domain (Phosphotyrosine protein) phosphatases II (SSF52799)
Link
InterPro Scan - TAIR