ET8797

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

semi-sterile

Anatomical entity /structure development stage	Phenotypes
seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997)

Original: ET8797

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 4; Position: 16309219 [Map]; Strand: c
- AT4G34040.1 - [+] show detail - RING/U-box superfamily protein
  Distance: -540; Region: promoter

TATTTTACCG ACCGTTACCG ACCGTTTTCA TCTACGCACT TCATACGGTA 
GGTTTAGATT TGTCTAAATA CTTAAAAAAA ATTTTGTCTA AGTTGTTGTC 
CGTTACAAAG TTTTTTTCTT TGTGACAACT TGACAACATT GACAAATAGA 
AAAATAAATT TCGATGAAAC CTATGAAATG GGCTATGGCC CAACTAAAAA 
GAGTGGGAAA TTAAAGATGG GATGGTTCAA GTGTATACTT CGAACTTCCG 
ACATTAGGGT CAAAGGATTT TTAAAAGGCA ACCATTTGTT CCACTTTCTC 
GAACAAAAAC GAGCCATTTA TTAATATATA GTACGGCTGA ATTGGTTTTG 
TTCGTCATTG TGTAAACACA AAGTCATTCG AATTATGTTA GGGTCCGTTG 
ATAATATAGA CGGCCCATCC CACGCACATA TTAAGTGTTC AACTCCATAG 
AATATCATAT GGGACACTGT TTTTAATTTA TAATCACCAT TTAAAATGTT 
TAAATGTTTA TGCAAATTGG ATGGC

3 prime edge [+] show sequence

Not mapped
Flanking Genome Sequence: ET8797 - 3-prime edge
```
GGGGGGGGGG GGGGGGGGGG GGGGG
```

5 prime edge [+] show sequence

Chromosome: 4; Position: 16309111 [Map]; Strand: c
- AT4G34040.1 - [+] show detail - RING/U-box superfamily protein
  Distance: -432; Region: promoter

ATGTTTCTAG CTTATTTAAT TGAGAGAGAG GACACGTTTA TAGTTTCTAT 
TAGCTAGATG GATTAATAGG AAGGGCTTGA GAGGGGTCTC TGTTTTGGAC 
TTTAATAGCC CAAAAACAGA ATACAAGTCA AGCCATATGG GTCCACTAAA 
ACTGCATGAG AGCTACGTGT ACACAACTGT TACACAATAA TATTATACCA 
TTTCACGTCT CAATTAACTT TCTATTATAA ACAATTACTT TATATAGTAA 
TCAAACGTCT TTAAGTTTTT AAACGGTCCA TTTTTCACAT TTATTACAAA 
CACCAAAAAA AAAAGGGAAA AAAATTTAAC GTAGGAAAAA AAAATTGGTA 
AAGCACCATC AAGCAACGTC ATGAATAAAT AAATAAAAAC TTTTTACAAT 
AAATTATGTC TGCCTGTTTA AATTAACCAA ACTTTTTTTG ATTAAAATCT 
TTGGAACCAA ATTAAATTTT AATTACACAA AAATGTGTTT GTAAAAAAAA 
ATAGTTTCAT TCATCACATG TAATCTTTAC GCCTTTAAAT CCTTTTTTCC 
CTAATCCACT GTTTTTTTTT

AT4G34040.1

Model type: Protein coding
Short Description: RING/U-box superfamily protein
Computational Description: RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G15530.3); Has 8873 Blast hits to 7809 proteins in 315 species: Archae - 0; Bacteria - 89; Metazoa - 2441; Fungi - 580; Plants - 3871; Viruses - 41; Other Eukaryotes - 1851 (source: NCBI BLink).
Link: InterPro Scan - TAIR