ET8800

CSHL Arabidopsis genetrap mutant lines

Original: ET8800

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET8800

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9570587 [Map]; Strand: c
      • AT1G27550.1 - [+] show detail - F-box family protein
        Distance: -1257; Region: intergenic
      • AT1G27560.1 - [+] show detail
        Distance: 268; Region: intergenic
    Flanking Genome Sequence: ET8800 - 3-prime edge 
    TGTACGATAG GATACCTTTA CATGGGCGCT AAAGCATAAT CAAAGTCATA 
    ACGTTAGTTA ACAAAGCTAA ACTACATATG GTACTGTCAA CTGGACTAGG 
    T

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: ET8800 - 3-prime edge 
    GAGACACAGG GGATTTTACA GTG

AT1G27550.1

Model type
Protein coding
Short Description
F-box family protein
Computational Description
F-box family protein; BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF295) (TAIR:AT1G27580.1); Has 105 Blast hits to 103 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 105; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G27560.1

Model type
Pseudogene
Curator Summary
pseudogene of F-box family protein-related
Link
InterPro Scan - TAIR