ET8871

CSHL Arabidopsis genetrap mutant lines

Original: ET8871

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET8871

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 9852425 [Map]; Strand: w
      • AT5G27807.1 - [+] show detail - MIR164/MIR164C; miRNA
        Distance: -239; Region: promoter
    Flanking Genome Sequence: ET8871 - 3-prime edge
    CTTCTGCTTG CTCATTCACG TACATATATA GTGTGGGTTT CAAGTGTTTG 
    ATAAAATGAG GCAAAAATCT TAGTATTTAA AATAAAATCA CGAAAATACA
    AAAAGTATTA GCTTGAAGAT AGATGGGAGT GGTATTAAAG TGATTGAGTC
    TTGAAGTGGG ATTTCTTTAA ATGTAGATAA GAAGTAAAAT GGCAATCATA
    TCACCAAGTC TTTCCATTAC CTTTAATGAT TCTCTTTTTT AAAACAAATA
    TTTTTTGGAG ATGTAGTAGA TACAAGACGC ATGTGTACAT AGCTAGACCT
    CGCAGTTAAG T

AT5G27807.1

Model type
miRNA
Short Description
MIR164/MIR164C; miRNA
Curator Summary
Encodes a microRNA that targets several genes containing NAC domains including NAC1. Overexpression leads to decreased NAC1 mRNA and reduced lateral roots. Loss of function mutants have increased NAC1 and increased number of lateral roots. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGGAGAAGCAGGGCACGUGCG. Early extra petal mutant (eep1)
Link
InterPro Scan - TAIR