ET8890

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

semi-sterile

Anatomical entity /structure development stage	Phenotypes
seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997)

Original: ET8890

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 4; Position: 20218 [Map]; Strand: w
- AT4G00050.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
  Distance: 152; Region: intergenic
- AT4G00060.1 - [+] show detail - Nucleotidyltransferase family protein
  Distance: -1219; Region: intergenic

TACTTGTAGC ATTATAAATA AATTCAATAA CATTATCAAC AAATTATTGT 
GGAATTTTGC AGACAAAGCA TATGCTATTG TGTCTACTCC ATTTCCACTT 
TTCACTTATC CTCAGTCACA TAATTAAATT CGTGAAAACG AAGGATTATC 
TACTGTTCGT ATATTGATCT AGAAAATTTG GAGTTNTTTC CCCGGCGAAC 
GAAGNAGACG TGGAGTGATG TTACTAATTC ACTCAAACAT AACCATTATT 
TATTTTTCTC TATCCAATTA CGACCACATA TTTTTAAAGT ACGTAATACG 
TATAATATCA TAATTCATGA GAAGCCTATA CATATAAATA AATAATTATG 
ATGGAATATA TATATGTATG TATGTGACTA ACACATATAT AGACGTAAAC 
TATATAGAGG TGTTTGAGTA ATAATCATTT TGGATTCGAA GGAGGAGGAA 
GTTGTTGTTG CATTTGCTGA TATAATGTAG CCATCCTGCT ATACGCTTCC 
ATCGTCGTTG GCTGCAATTC CAAATATATA AAAATATAAA TGGTACTGAA 
GCATTGTTTA GACCCAAGTT GTATATCTAT ATATAGAAAA AGGGGTCACC 
TGAGTAGAGC ATGCAAGAAA GGCAGACATA GGATCGGGGA TGAGAGGAGA 
CTGAAATCG

5 prime edge [+] show sequence

Not mapped
Flanking Genome Sequence: ET8890 - 5-prime edge
```
GGGGGGGGGG GGGGGGGCGG GGGGGGGGGG GGGGG
```

AT4G00050.1

Model type: Protein coding
Short Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description: unfertilized embryo sac 10 (UNE10); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: double fertilization forming a zygote and endosperm, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: phytochrome-interacting factor7 (TAIR:AT5G61270.1); Has 3766 Blast hits to 3760 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 365; Fungi - 50; Plants - 3342; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00060.1

Model type: Protein coding
Short Description: Nucleotidyltransferase family protein
Computational Description: maternal effect embryo arrest 44 (MEE44); FUNCTIONS IN: nucleotidyltransferase activity; INVOLVED IN: embryo development ending in seed dormancy; CONTAINS InterPro DOMAIN/s: Nucleotidyl transferase domain (InterPro:IPR002934), PAP/25A-associated (InterPro:IPR002058); BEST Arabidopsis thaliana protein match is: Nucleotidyltransferase family protein (TAIR:AT5G53770.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR