ET8975

CSHL Arabidopsis genetrap mutant lines

Original: ET8975

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET8975

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 654505 [Map]; Strand: w
      • AT4G01516.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 4548; Region: intergenic
      • AT4G01520.1 - [+] show detail - NAC domain containing protein 67
        Distance: 1902; Region: intergenic
    Flanking Genome Sequence: ET8975 - 3-prime edge 
    ACATATATAG CTAACTCTAA ACAAGAATCT GAAATCTAGG GACAATCTAA 
    CTAGTTACAA CAATCTTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 115347 [Map]; Strand: c
      • AT4G00260.1 - [+] show detail - Transcriptional factor B3 family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: ET8975 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTATTGTTGG 
    GACCTAGTTG TTGTGGGATT CAATATGGTT CATCTCACTC GACAAAGAAC 
    AACCTCGGTG ACGGTGAGTT GTGTTCTGTC TCTGGCTCTT CAAGAAACGT 
    GGTTTGCTTT TGGAATGTGG ATCAGTGAGT AGAGATAACC AGTTTGACTA 
    TATAACACTT AGATTCTATT ATTTTTCAGA GAAAAAGAAA GTGAAGGAGA 
    ATCCAAATGG AGAAGCAGAG TCTTCTTCAC GAGATCCCTC TTGTTTTGTG 
    GCTAATGTTG CGCCTTCGAG TCTACGTTAT GACTTGATGG TATTTGACTC 
    TTAAGAACCC GAAAAGAAAC TCTCATTCTA GGGTCTGAAC TCATGTTGTA 
    TTCTAATGAA TTTTTCAGAG ATTTCCAAGG GGTTTTGTGA GGGATAATGG 
    TGTAGTCGGA TCTGGAGAGA TTGTTCTGAT GAATGAAAAG GGCAGATCAT 
    GGAATTTTAA CTTGAGACAA AAGCCATCAA ACGGAACAGT TTATGTTAGA 
    GGAGGGTGGG TGAGTTTTTG TGATGCCAAT GGGCTTTAAG CTGGCGATAA 
    CTACACTTTC AAACTGATCA AAAGAGCAGG AAC

AT4G00260.1

Model type
Protein coding
Short Description
Transcriptional factor B3 family protein
Computational Description
maternal effect embryo arrest 45 (MEE45); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, embryo development ending in seed dormancy; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: Transcriptional factor B3 family protein (TAIR:AT2G24645.1); Has 539 Blast hits to 263 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 539; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01516.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01520.1

Model type
Protein coding
Short Description
NAC domain containing protein 67
Computational Description
NAC domain containing protein 67 (NAC067); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC with transmembrane motif1 (TAIR:AT4G01540.1); Has 2752 Blast hits to 2745 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2752; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR