ET9106

CSHL Arabidopsis genetrap mutant lines

Original: ET9106

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET9106

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3583040 [Map]; Strand: w
      • AT3G11405.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 1681; Region: intergenic
      • AT3G11410.1 - [+] show detail - protein phosphatase 2CA
        Distance: 843; Region: intergenic
    Flanking Genome Sequence: ET9106 - 5-prime edge 
    TGATCATTAT AACATTATGC GAATTCCGAT CTAATAATTT TATGGCAGTG 
    CCTTATCTTT TGATGGTGAA ATCTCCAAAC TTCGACCAAT TGTGATGTAT 
    TGGATTATCC AATCGAACTT TTCACGCGTG GGGATATAAA TTTACCGTAG 
    TTTTGGTTCA AATGTGGTAT TTTCATATCC AAAAGATGCT AGGTTTACGA 
    AAAATGTCTT CAACAAAACC CCATAATAAT TGTTGGTTTA GAAAACAAAA 
    CATAACCTAA CGTATGATTA ATACCTAACA AACATTAATG TGAAGGGTTT 
    ATAAAAACAT GATTGAATAG AATAAGATTT TATTATCTGG TCATTGTGGC 
    AAGTGGCAAG TGGCTAGTAA TGGACGGTTA AAAGTATGTA TTATTTTTTG 
    TTCAAGTTGA TATTAATTTA TTTATAAAAG AATGTGAAGA TCATATTCCT 
    TTTTCTTACC CTCCTAGTTG ATATTTTCTA GTCAATTTAA TCAAAATCTG 
    TTTAATTGAT TATTGATTCC GACCTTAACT GACATTAAGC ATTCGACAAT 
    GTTGCCAGAC AAGTCTCTTA ACTTAATTAT CTTCATTAGT ATTAAAAGAA 
    TTAATAAATC ATTGTACTTT CTAGTTCTTA TATTGATTGT CCAGATTAGT 
    CTCTTCCACC AATATATATA TATTTTT

AT3G11405.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55570.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G11410.1

Model type
Protein coding
Short Description
protein phosphatase 2CA
Curator Summary
Encodes protein phosphatase 2C. Negative regulator of ABA signalling. Expressed in seeds during germination. mRNA up-regulated by drought and ABA.
Computational Description
protein phosphatase 2CA (PP2CA); FUNCTIONS IN: protein binding, protein serine/threonine phosphatase activity, phosphoprotein phosphatase activity; INVOLVED IN: in 6 processes; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: highly ABA-induced PP2C gene 2 (TAIR:AT1G07430.1); Has 6894 Blast hits to 6854 proteins in 510 species: Archae - 4; Bacteria - 413; Metazoa - 1689; Fungi - 773; Plants - 2747; Viruses - 7; Other Eukaryotes - 1261 (source: NCBI BLink).
Link
InterPro Scan - TAIR