ET9292

CSHL Arabidopsis genetrap mutant lines

Original: ET9292

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET9292

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 20343771 [Map]; Strand: w
      • AT3G54910.1 - [+] show detail - RNI-like superfamily protein
        Distance: 0; Region: exon2 (CDS)
      • AT3G54910.2 - [+] show detail - RNI-like superfamily protein
        Distance: 0; Region: exon3 (CDS)
      • AT3G54910.3 - [+] show detail - RNI-like superfamily protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: ET9292 - 3-prime edge
    TGGAAAAGCT AACTGTTGTT GTCCCATCTT TGCAGATTTT ATCACTCTTT 
    ATACCTCATT CTTATGAGAT CGATGGGATT GTGATAGAAA CTCCTTCTTT
    AAAGTATTTT AAACTTATAG ACCATATGAG GGAGAGTCAC TACTGTTTGG
    TTAAGAATAT GCCTAACCTG ATAGAGGCAG ATATAGATGT TGAATTACAT
    AGCATCAAGA GTCTTATTGG ATCAATCACA TCTGTCAAGC GTCTTTCAAT
    ATGTTCACAG GTATCATTTT CTCAACTCAT TGTTTAGATA TGCATTTGCT
    GATAATTTTT AATATTGCGC AGGCTATGTA TGATGGAGGT TTTGTCTTCA
    ACCAGCTTAA ACATCTGAAG CTATGTAGAT GCAAAGGGCA TTCGTCGGAT
    TTACTTGTCC GACTGCTCAA AGATTCTTCT AACTTACAAG CACTAGACCT
    TTCCGAAATG GATGTAAGTT TGTTCGTCAA ACTCTTTTT

AT3G54910.1

Model type
Protein coding
Short Description
RNI-like superfamily protein
Computational Description
RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT4G10400.2); Has 997 Blast hits to 979 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 993; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G54910.2

Model type
Protein coding
Short Description
RNI-like superfamily protein
Computational Description
RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT4G10400.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G54910.3

Model type
Protein coding
Short Description
RNI-like superfamily protein
Computational Description
RNI-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT4G10400.2); Has 997 Blast hits to 979 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 993; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR