ET9917

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

stunted plants

Anatomical entity /structure development stage	Phenotypes
sporophyte vegetative stage (PO:0007134)	abnormal (PATO:0000460)

Original: ET9917

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 5; Position: 5344797 [Map]; Strand: w
- AT5G16310.1 - [+] show detail - Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1
  Distance: -512; Region: promoter
- AT5G16320.1 - [+] show detail - FRIGIDA like 1
  Distance: 0; Region: exon1 (CDS)

TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTACTCT CAACTCCGGC 
TCAACAACGG GTTGCTCCGA TACCTCCTCC GAATACGACG ATTTCCCTGC 
ATCAGAAGCG TCGATTCTAT ACGAATCATG TTCCAAAGGA GATGTAGAGT 
GGAGGAGGCG GAAACGGCTA GCAAGGGAGG ATTGGAGAGA GGAAAAGTGA 
GAATCGATCT CAGACCAGGA AAGTGAGAAA GACGGTGAAA GGAGAGAGCG 
ATGAGCTTGA AGATCGTCGA AAGCTTTCTT TAGCTTTTCC TTCTTCTATC 
ACATACTGAT TTATCGCGGA GGCCATAGTC TCACTCGCCG TCATTGGTTG 
ATCTCTAAGA TTTCTTTGGC TCTCTCCGGC AAGGATATAT AAGAACGTTA 
TCGGTTCGGT TCGGTTCGAG TAAGTTTAAT AAAACCAGAA CCGAATTGTT 
GTTCACTTGA TTGGGTTCGA TTTATAGAAA TTGAAATGGT CCGGATGAAT 
TCAATTTCGT TTCTACTCCG TTTAGAGCGA CCTCTATTAA GACAAAATCG 
AGACCACACC AGTCTATAGT CTCTCTTTCG AGTCTGCAGC TAGCGTGAAG 
ACGATGAAAT CGATGGGAGG AGATAGATAA GCGCGAAT

5 prime edge [+] show sequence

Chromosome: 5; Position: 5344902 [Map]; Strand: w
- AT5G16310.1 - [+] show detail - Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1
  Distance: -617; Region: promoter
- AT5G16320.1 - [+] show detail - FRIGIDA like 1
  Distance: 0; Region: exon1 (CDS)

GACGGAATTG GTTTGATTAA GTATTTGATT AGGATATGGG ATGATGAAAC 
TCCTCTCAAT CAGGAAGTTT CTGCAGCGAT TCGTTACTCT CCGGATCCGG 
CGTCCATGGT GCTTGACGCG ATTGAAGGTT CGAACTACAC ACCGTCATCA 
TCGGGAAGAT CATTCGATGT AAGGAGAGTT TTCGATTTGT TAATGGAAGT 
TTTGATTGAG ATCAATGCGA ATATCACTGT TGATACGAGA AATAGAGCTA 
AGAAACTGGC TTACCATTGG AAATCTAAGG TTGGTGTCAA GCCTTTCGAG 
GCGTTAGTGT TTCTGCATTT GGTCGCAGCT TTTGAATTAG GATCAGAATT 
TGACACAGAG GAGCTTTCTG ATTACGTTTT CATGATCGCT AAGTATAAGC 
AAGCAACTTT GGTTTGTAAC AAGATTGGTG TAGATAGGAA AAGAGTTGGG 
AAACTCATCA AGACTCTCTT GGATTCTGGT AAACCAATTT TAGCAGTCAA 
ATTCATGTAT TAGTGTGGGA TGACTGATGA ATTTGAGCCA ATCCCTGTTT 
TGAAATCTTA CATTAAGGAC TGTAGAGAAG CTGCTCTTAG AGTTTGCGTG 
GAAGATAACT ACT

AT5G16310.1

Model type: Protein coding
Short Description: Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1
Computational Description: UCH1; FUNCTIONS IN: ubiquitin thiolesterase activity; INVOLVED IN: shoot development, shoot morphogenesis, leaf development, ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular, nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (InterPro:IPR001578), Ubiquitinyl hydrolase, UCH37 type (InterPro:IPR017390); BEST Arabidopsis thaliana protein match is: Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (TAIR:AT1G65650.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G16320.1

Model type: Protein coding
Short Description: FRIGIDA like 1
Curator Summary: family member of FRI-related genes that is required for the winter-annual habit. Genbank accession BK004884
Computational Description: FRIGIDA like 1 (FRL1); CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: FRIGIDA like 2 (TAIR:AT1G31814.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR