ET9917

CSHL Arabidopsis genetrap mutant lines

Original: ET9917

Phenotypes

Morphological phenotypes

Original description

  • stunted plants
Anatomical entity
/structure development stage
Phenotypes
sporophyte vegetative stage (PO:0007134)
  • abnormal (PATO:0000460)

Original: ET9917

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 5344797 [Map]; Strand: w
      • AT5G16310.1 - [+] show detail - Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1
        Distance: -512; Region: promoter
      • AT5G16320.1 - [+] show detail - FRIGIDA like 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET9917 - 3-prime edge
    TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTACTCT CAACTCCGGC 
    TCAACAACGG GTTGCTCCGA TACCTCCTCC GAATACGACG ATTTCCCTGC
    ATCAGAAGCG TCGATTCTAT ACGAATCATG TTCCAAAGGA GATGTAGAGT
    GGAGGAGGCG GAAACGGCTA GCAAGGGAGG ATTGGAGAGA GGAAAAGTGA
    GAATCGATCT CAGACCAGGA AAGTGAGAAA GACGGTGAAA GGAGAGAGCG
    ATGAGCTTGA AGATCGTCGA AAGCTTTCTT TAGCTTTTCC TTCTTCTATC
    ACATACTGAT TTATCGCGGA GGCCATAGTC TCACTCGCCG TCATTGGTTG
    ATCTCTAAGA TTTCTTTGGC TCTCTCCGGC AAGGATATAT AAGAACGTTA
    TCGGTTCGGT TCGGTTCGAG TAAGTTTAAT AAAACCAGAA CCGAATTGTT
    GTTCACTTGA TTGGGTTCGA TTTATAGAAA TTGAAATGGT CCGGATGAAT
    TCAATTTCGT TTCTACTCCG TTTAGAGCGA CCTCTATTAA GACAAAATCG
    AGACCACACC AGTCTATAGT CTCTCTTTCG AGTCTGCAGC TAGCGTGAAG
    ACGATGAAAT CGATGGGAGG AGATAGATAA GCGCGAAT
  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 5344902 [Map]; Strand: w
      • AT5G16310.1 - [+] show detail - Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1
        Distance: -617; Region: promoter
      • AT5G16320.1 - [+] show detail - FRIGIDA like 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET9917 - 5-prime edge
    GACGGAATTG GTTTGATTAA GTATTTGATT AGGATATGGG ATGATGAAAC 
    TCCTCTCAAT CAGGAAGTTT CTGCAGCGAT TCGTTACTCT CCGGATCCGG
    CGTCCATGGT GCTTGACGCG ATTGAAGGTT CGAACTACAC ACCGTCATCA
    TCGGGAAGAT CATTCGATGT AAGGAGAGTT TTCGATTTGT TAATGGAAGT
    TTTGATTGAG ATCAATGCGA ATATCACTGT TGATACGAGA AATAGAGCTA
    AGAAACTGGC TTACCATTGG AAATCTAAGG TTGGTGTCAA GCCTTTCGAG
    GCGTTAGTGT TTCTGCATTT GGTCGCAGCT TTTGAATTAG GATCAGAATT
    TGACACAGAG GAGCTTTCTG ATTACGTTTT CATGATCGCT AAGTATAAGC
    AAGCAACTTT GGTTTGTAAC AAGATTGGTG TAGATAGGAA AAGAGTTGGG
    AAACTCATCA AGACTCTCTT GGATTCTGGT AAACCAATTT TAGCAGTCAA
    ATTCATGTAT TAGTGTGGGA TGACTGATGA ATTTGAGCCA ATCCCTGTTT
    TGAAATCTTA CATTAAGGAC TGTAGAGAAG CTGCTCTTAG AGTTTGCGTG
    GAAGATAACT ACT

AT5G16310.1

Model type
Protein coding
Short Description
Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1
Computational Description
UCH1; FUNCTIONS IN: ubiquitin thiolesterase activity; INVOLVED IN: shoot development, shoot morphogenesis, leaf development, ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular, nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (InterPro:IPR001578), Ubiquitinyl hydrolase, UCH37 type (InterPro:IPR017390); BEST Arabidopsis thaliana protein match is: Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (TAIR:AT1G65650.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G16320.1

Model type
Protein coding
Short Description
FRIGIDA like 1
Curator Summary
family member of FRI-related genes that is required for the winter-annual habit. Genbank accession BK004884
Computational Description
FRIGIDA like 1 (FRL1); CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: FRIGIDA like 2 (TAIR:AT1G31814.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR