F00335

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F00335

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F00335

Determination of introduced cDNA(s)

  • RAFL05-19-N12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-19-N12 - Resource: pda13449

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-19-N12 - full reading 
    ACCACATTAA TTTAAAACAA AGAAAACATC AAAATGGCTG AAAAAGTAAA 
    GTCTGGTCAA GTTTTTAACC TATTATGCAT ATTCTCGATC TTTTTCTTCC 
    TCTTTGTGTT ATCAGTGAAT GTTTCGGCTG ATGTCGATTC TGAGAGAGCG 
    GTGCCATCTG AAGATAAAAC GACGACTGTT TGGCTAACTA AAATCAAACG 
    GTCCGGTAAA AATTATTGGG CTAAAGTTAG AGAGACTTTG GATCGTGGAC 
    AGTCCCACTT CTTTCCTCCG AACACATATT TTACCGGAAA GAATGATGCG 
    CCGATGGGAG CCGGTGAAAA TATGAAAGAG GCGGCGACGA GGAGCTTTGA 
    GCATAGCAAA GCGACGGTGG AGGAAGCTGC TAGATCAGCG GCAGAAGTGG 
    TGAGTGATAC GGCGGAAGCT GTGAAAGAAA AGGTGAAGAG GAGCGTTTCC 
    GGTGGAGTGA CGCAGCCGTC GGAGGGATCT GAGGAGCTAT AAATACGCAG 
    TTGTTCTAAG CTTATGGGTT TTAATTATTT AAATAATTAG TGTGTGTTTG 
    AGATCAAAAT GACACAGTTT TGGGGGAGTA TATCTCCACA TCATATGTTG 
    TTTGCATCAC ATGGTTTCTC TGTATACAAC GACCAGATCC ACATCACTCA 
    TTCTCGTCCT TCTTTTTGTC ATGAATACAG AATAATATTT TAGATTCTAA 
    AAAAAAAAAA AAAA

    Gene models with high sequence identity

    1. AT1G16850.1 [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; ...
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT1G16850.1

    Model type
    Protein coding
    Computational Description
    unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; LOCATED IN: endomembrane system; EXPRESSED IN: leaf apex, leaf whorl, male gametophyte, flower, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64820.1); Has 24 Blast hits to 24 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR