F00718

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) increased width (PATO:0000600) (Rosette leaf::Shape::wide)
	sporophyte vegetative stage (PO:0007134)	decreased speed (PATO:0000304) (Adult plant::Growth::slow)
T2
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) increased width (PATO:0000600) (Rosette leaf::Shape::wide)
	sporophyte vegetative stage (PO:0007134)	decreased speed (PATO:0000304) (Adult plant::Growth::slow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F00718

Determination of introduced cDNA(s)

RAFL06-11-K21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-11-K21 - Resource: pda03085

full reading [+] show sequence

AACAAATCTC TCTGTTTCTC CCGCTCTTGC TCTGTTTTCT CAAAGACAAA 
AGAGGACATC GTCGTTGACT CCTCTTCTCT ATGGCTACTG CTAAGAACAA 
GGGAAAATCA ATCAGGGTCC TTGGTACCAG TGAAGCAGAG AAAAAGGATG 
AGATGGAGTT GGAGGAGGAG TTCCAGTTTA GTAGCGGCAA GTATAAAGAT 
TCGGGTCCTG GCTCGGACAT GTGGTTAGGA GATGCTTCCT CTACGTCTCC 
AAGAAGTCTT AGGAAGACTA GAACCTTTGA CCGACATAAT CCCTATCTCG 
TATCTTCTTA TGCTACTCCT CAGCCGCCAA CAACAACTAC ATGCTCTGTC 
TCTTTTCCCT TTTACCTCCC TCCAGCGATT CAAAATCAAC AACGATTTTT 
ACACCCGAAT GACCCTTCAG GACAAAGACA GCAACAAATG ATCTCGTTTG 
ATCCTCAACA ACAGGTGCAA CCATATGTTG CACAACAGCA GCAACAACAA 
CAACATCTAT TGCAGTACTG GAGAGACATT CTGAAGCTGA GTCCGAGCGG 
AAGAATGATG ATGATGAACA TGTTAAGACA AGAAAGCGAT CTGCCACTGA 
CGAGGCCACC GGTTCAACCC TTCAGCGCCA CCAAGCTATA TAGAGGTGTC 
AGGCAACGCC ACTGGGGAAA ATGGGTTGCC GAGATCCGTA AGCCACGAAA 
CAGGACACGT CTCTGGCTAG GGACATTCGA TACAGCAGAA GAAGCCGCCA 
TGGCCTACGA CCGCGAGGCC TTCAAGTTGA GGGGAGAGAC CGCTAGGCTC 
AATTTCCCTG AACTTTTTCT CAATAAACAA GAGCCAACTC CCGTGCATCA 
GAAACAATGT GAGACGGGGA CTACTAGTGA AGACTCAAGC AGAAGAGGAG 
AGGATGATTC GAGCACGGCA TTGGCAGTAG GAGGGGTGAG TGAGGAGACG 
GGTTGGGCTG AGGCATGGTT CAATGCAATT CCAGAGGAAT GGGGACCTGG 
AAGCCCTCTA TGGGATGATT ACCACTTTCC CATTTCTAAC CATAAGGACG 
ATCTTGACGC CACACAAAAC TCTTCTTCTG ATACAATTTA GGACCTTTGT 
TAGAATATAG ATATGCTTAG TTGTATGACT GATCTAGCTT GTGTTTTTTT 
TTTGGGTGGA GACAGTTTTT GTCATCTTCC ACATTTTAGA TTCTATTTTC 
GACCATCATT TTTTTCTTGA TCGGTGACTA TGAATCTAAT GGGGTCAATC 
ATTTTCACAT ATAAAACTTA AGTATTTGGT GTTTGTACTT

Gene models with high sequence identity

AT2G20880.1 [+] show detail - Integrase-type DNA-binding superfamily protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
ProfileScan	Pathogenesis-related transcriptional factor/ERF, DNA-binding	23.235
FPrintScan	Pathogenesis-related transcriptional factor/ERF, DNA-binding	2.7e-11
FPrintScan	Pathogenesis-related transcriptional factor/ERF, DNA-binding	2.7e-11
superfamily	DNA-binding, integrase-type	2.5e-25
Gene3D	Pathogenesis-related transcriptional factor/ERF, DNA-binding	5.7e-24
HMMSmart	Pathogenesis-related transcriptional factor/ERF, DNA-binding	2.8e-41
HMMPfam	Pathogenesis-related transcriptional factor/ERF, DNA-binding	1.5e-16

See the detailed result >

AT2G20880.1

Model type: Protein coding
Short Description: Integrase-type DNA-binding superfamily protein
Computational Description: Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT4G28140.1); Has 5938 Blast hits to 5739 proteins in 258 species: Archae - 0; Bacteria - 4; Metazoa - 6; Fungi - 2; Plants - 5899; Viruses - 2; Other Eukaryotes - 25 (source: NCBI BLink).
Link: InterPro Scan - TAIR