F00939

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F00939

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F00939

Determination of introduced cDNA(s)

  • RAFL04-15-F10 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-15-F10 - Resource: pda00372

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-15-F10 - full reading
    TGAAGGGAAA ATCCTAATAA AGGAGAAGAA AAACAGATCT GAAATCCCGC 
    TTGATACTCC ACCGACTTTA AACTACTGGT TTTTGTTTGA TTTAAGTATA
    GTGTTAATGA CTCCTCTCTC CACCTTCCTT TGATTCTACC TATCACTTCC
    CTTGCCGTTG CTCCATCTTC ATCACTAGTC ACTATACACC AATCTTAGAT
    CCGGGAAGCT AATTTCTCTT CTCCGATCGG TGAATGCAGT TACATTGACC
    TCGGATCTAA CCAAGCTCTT CTGGTTTCCA GCTCTCTGGA ATTCAAAAAA
    ATGGAGGAGA AATCCAAGTC AAGAGGTTGG TGCGGTTGGT TCATCGCCAT
    TATTGTGCTA GCTTCTGTTA TCCTCGCCGT CGTTTACACT GTTAAATTGA
    GAACGAAGAA ATCCGGTGAC GATGACGGTG GCGGTCCCGT TCCTGGACCT
    CCCGGCGCCA TTGATAAGAA ATACGCCGAC GCTCTTAAGC TCGCTTTGCA
    GTTCTTCGAT ATCCAGAAAT CTGGTAAATT GGAGAACAAT AAGATACCTT
    GGAGAGGAGA TTCAGGTCTT AAAGATGGAA GTGAAGATAA TCTGGATCTT
    TCCAAAGGCT TATATGATGC TGGAGATCAT ATAAAGTTTG GTTTTCCAAT
    GGCTTTCACT GCTACAGTTT TGTCATGGTC GATTCTTGAG TATGGTGATC
    AAATGAATGC AGTGAACCAA TTGGATCCTG CTAAAGACTC TCTCCGGTGG
    ATCACTGACT ATCTTATCAA AGCTCATCCT TCTGACAATG TCCTCTATAT
    CCAGGTGGGA GATCCAAAAG TAGATCATCC ATGCTGGGAG AGACCAGAGG
    ATATGAAAGA GAAGAGACCA CTTACTAAAA TTGATGTAGA TACTCCAGGG
    ACAGAGGTTG CTGCTGAAAC TGCTGCAGCT ATGGCTTCAG CGTCTTTGGT
    GTTTAAGGAT AGTGATCCTA CATATTCAGC AACGCTTCTG AAACATGCGA
    AGCAGTTGTT TAATTTTGCA GATACAAAGA GAGGCTCTTA CAGTGTTAAC
    ATACCTGAGG TTCAGAAGTT TTACAATTCG ACTGGATATG GTGATGAGCT
    ACTATGGGCA GCTAGTTGGT TGTATCATGC AACAGAGGAT AAAACTTACC
    TTGATTATGT GTCTAATCAT GGAAAAGAAT TTGCTAGTTT TGGAAATCCT
    ACTTGGTTTA GTTGGGACAA CAAGCTTGCA GGAACACAGG TACTATTATC
    AAGATTACTC TTCTTTAAGA AAGATTTATC AGGAAGCAAG GGACTTGGAA
    ATTACAGGAA CACAGCTAAA GCTGTCATGT GTGGACTTCT ACCAAAGTCT
    CCAACATCTA CAGCTAGTAG AACAAACGGT GGTCTTATAT GGGTTAGTGA
    ATGGAACTCG ATGCAACAAT CCGTTTCGTC AGCGTTTTTA GCCTCGCTTT
    TCAGTGATTA CATGCTCACT TCCCGTATCC ATAAAATATC TTGCGACGGG
    AAAATCTTCA AAGCAACAGA GCTTAGAGAT TTCGCCAAAT CGCAGGCTGA
    TTACATGCTG GGGAAGAATC CGTTGGGAAC GAGCTTCGTG GTGGGTTATG
    GAGACAAATA CCCACAATTT GTGCATCATA GAGGAGCTTC GATCCCGGCA
    GATGCAACAA CGGGTTGCTT AGATGGATTC AAATGGTTTA ACTCGACGAA
    ACCAAACCCA AACATAGCAT ATGGTGCACT CGTAGGTGGA CCTTTCTTCA
    ATGAGACGTT CACTGACTCA CGAGAGAACC CAATGCAGAA CGAGCCAACC
    ACTTACAACA ATGCACTCCT CGTTGGTCTC TTGTCTAGTC TTGTCACTAC
    ATCTTCTACT TTACAGTCGT TGAAGTGAGC TTTGCGTGTT TTAGCCTTCT
    TATTGAAAAT CACATTGCTT CATTTTTATT TGTAATTTTT TAAAAAAAAT
    CGTGGGTGTG TGTGTATTCA CGTTGTGTAT TGCTTGATAT GTTGATGCGT
    GTAACCAAAA AAAAAAAAAA AA

    Gene models with high sequence identity

    1. AT1G75680.1 [+] show detail - glycosyl hydrolase 9B7
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Glycoside hydrolase, family 9 1.9e-151
    Gene3D Six-hairpin glycosidase 1.6e-155
    superfamily Six-hairpin glycosidase-like 2.7e-163
    PatternScan Glycoside hydrolase, family 9, active site 0
    HMMPanther Glycoside hydrolase, family 9 5e-228
    HMMPanther ENDO-1,4-BETA-GLUCANASE 5e-228

    See the detailed result >

    AT1G75680.1

    Model type
    Protein coding
    Short Description
    glycosyl hydrolase 9B7
    Computational Description
    glycosyl hydrolase 9B7 (GH9B7); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9B5 (TAIR:AT1G19940.1); Has 1881 Blast hits to 1863 proteins in 273 species: Archae - 2; Bacteria - 718; Metazoa - 187; Fungi - 17; Plants - 915; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR