F01009

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F01009

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F01009

Determination of introduced cDNA(s)

  • RAFL06-75-I20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-75-I20 - Resource: pda03568

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-75-I20 - full reading 
    GCTTTTTGTG TGGCTTATCC TTGTCTGTCA AATTCCTGCA AAAACTCTCG 
    CCTCTCTCAG ACAGTAAGAG GAACATATTT CCTTAATGTA TTGTTCCGTA 
    TAATCTTACA AGACATCCTG GTTGGTGTTG CAGAGAAGAG TGTTTCAAAG 
    TTTCTTCCTT TTTCGTTTTC CTGGTCTGAA TGAGCTCCCA ATGCCTTCTT 
    TAGGTACCTT TTCTGATATT GCTACTATCC AACCTTCATT TCAAGCTCAT 
    CTTGTTCCAT TGGGGGCTCA GAGTATTATC CATGCTAAAA GTCTACCTAA 
    TCCATGGAGA CAGTCTTGTT TCTCCAAGAA TTTGAAATTT TACACGGGTC 
    ATAGTCATGT CCGAAGAGGA AAAGTTCTTA TTACTGCAGT GGCCACTCTT 
    GAAACCAAGT ATCCGGCTCA AAAAGAAAAC GAACGGAGCT CTTCTTTGTC 
    TTCTGCTTCT TCGAAATCCT CAAATGGAAG TGCTGATGAT GGCGAAGAAC 
    AAGTGGATGA CAGAGAAAAG TTGAGAAGGA TGAGGATTTC TAAGGCAAAT 
    AGAGGGAACA CTCCTTGGAA CAAAGGCAGG AAGCATAGTC CAGAGACCCT 
    ACAGAAGATT AGAGAAAGGA CAAAGATTGC AATGCAAGAC CCAAAGGTGA 
    TGTCATATCA AGATGAAATT AGCGAATCTT GGGCACGCAC AAAACAAGGA 
    GACACGGATG AAGATTGGAG AGGGAGTGCG GATGCGATGG GCAAGGAGGA 
    AGGAGAGGAG AAAAGTGCAG GAGACATGTC ATTTCGAGTG GCAAAACTTG 
    TTAGCGGAGG CTGCTAAACA AGGATATACA GACGAAGAAG AGCTTCAGTG 
    GGATTCTTAC AACATCTTGG ATCAACAGAA TCAACTGGAA TGGCTGGAAA 
    GTGTTGAGCA GAGGAAAGCC ATTAAAGGAG CTAAAAGTAA CAGAAGAGCG 
    CCAAAATCTC CTGAACAAAG AAGGAGAATT GCAGAAGCAA TAGCTGCTAA 
    ATGGGCTGAT CCATCTTACC GTGAAAGAGT TTGCTCCGGC TTGGCAAAAT 
    ATCACGGTAT ACCTGTTGGT GTCGAGAGGC GTCGTAGAAG ACCAAGGAGC 
    GATGCAGAAC CTAGAAAGAA GACTCCTACA AAGAAAAGTA CAAGGGATTC 
    AGAGTTTGAA CGTCAAAGCC AAGTTCAAGT GGTGAAAGTA AGGAAGCGCA 
    AAACACCTGC GTATAAAGAT CCTTTGGCAA GTTCAAAACT GGAAATGATC 
    AAAAGCATCA GAGCAAAACG AGTGGCGGAA GAATCAAAGA AGATGGATGC 
    TGTGGAACGA GCAAGGCTTT TGATCTCGGA AGCTGAGAAA GCTGCGAAAG 
    TCCTCGAGAT TGCTGCTTGG AAAAACCCGG TTGCTCAAGC ATCGTTGTTA 
    GAGAGTAAAA AGCTCATAGC AGAAGCAACA CAACTGATTA AATCTTTAGA 
    GATGAGGCAG ATAGCTTCAG ATGAAGATGG GACTTACCCA TTTCTTCTTT 
    CACCTCAGCC TAATGACAGT GAATCTGAAA CCAAAGATAC AAACGATCAA 
    GAACGACCAG GAGAGATTAA TGGAACACAC ACATTGCAGA TCAACGGAGA 
    GAGTCTTCAC ATGAACATGA GATCTAACGA TTTACCGACT TTCGTTATAG 
    AAGGTACTAC AAACCAGTTT GTTTCTGATA TGGAATCCAA CACATCCCAA 
    GGAGGTAGAG AAGATATCAA ACTCGGGATA GTTGGGCAAC CAAACGGAAC 
    GAGAGTCCAT CCACCAGCAG AGTCTAATGG AGCTATCAGT CTTGCTGAGA 
    ATCATCCTCT TCCAAATGGT TACCACGGGA TTGACGAAAA GGCTGCATCT 
    TTGGAATCAG GAAACGTAAC GAAGAAGTGG GTTCGTGGAA GGCTCGTCGA 
    AGTCACAGAA GCAGCCTAAT GTCGTAGCAA TTTAGCAGAG AAAAGTCATA 
    TTTTTCAATT AGTAATTCAA AATTTTGGCT TATATATTGG TCTTATCTCT 
    TATGCTTGAG AGAAGCAGTT TCCAGTTTGT GATGTGCCAA TTGTATCTAT 
    AACTCAATTG TATGTCAGAG TTTCAGCTTA GTAAACAATT CTTCAT

    Gene models with high sequence identity

    1. AT1G53800.1 [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53250.1); ...
      E-value: 0; Score: 98.84

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    Coil coiled-coil 0

    See the detailed result >

    AT1G53800.1

    Model type
    Protein coding
    Computational Description
    unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53250.1); Has 1136 Blast hits to 882 proteins in 242 species: Archae - 2; Bacteria - 216; Metazoa - 257; Fungi - 77; Plants - 87; Viruses - 4; Other Eukaryotes - 493 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR